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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_246 and Pf6N2E2_247 are separated by 293 nucleotides
Pf6N2E2_247 and Pf6N2E2_248 are separated by 117 nucleotides
Pf6N2E2_248 and Pf6N2E2_249 are separated by 384 nucleotides
Pf6N2E2_249 and Pf6N2E2_250 are separated by 262 nucleotides
Pf6N2E2_246 - Methyl-accepting chemotaxis protein, at 306,379 to 308,322
_246
Pf6N2E2_247 - Transcriptional regulator, AraC family, at 308,616 to 309,659
_247
Pf6N2E2_248 - hypothetical protein, at 309,777 to 310,190
_248
Pf6N2E2_249 - Pirin, at 310,575 to 311,297
_249
Pf6N2E2_250 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 311,560 to 312,495
_250
Group
Condition
Pf6N2E2
_246
Pf6N2E2
_247
Pf6N2E2
_248
Pf6N2E2
_249
Pf6N2E2
_250
carbon source
propionate (C)
-0.4
-0.0
-4.9
-0.4
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
+0.1
-0.7
-3.3
-0.5
-0.2
carbon source
Carnitine Hydrochloride (C)
-0.1
-0.8
-2.1
-0.2
-0.0
carbon source
octanoate (C)
+0.1
-0.4
-2.5
-0.1
-0.3
carbon source
Carnitine Hydrochloride (C)
+0.2
-0.9
-2.3
-0.2
+0.2
carbon source
D,L-Lactate (C)
-0.1
+0.0
-2.0
-0.4
-0.4
stress
Rifampicin 0.003 mg/ml
-0.0
-0.0
-2.1
-0.3
-0.4
carbon source
octanoate (C)
+0.0
+0.0
-1.9
-0.3
-0.8
carbon source
propionate (C)
+0.1
+0.0
-3.2
+0.2
+0.2
motility
inner cut, LB soft agar motility assay
-0.5
+0.1
-2.2
-0.3
+0.1
carbon source
L-Lactate (C)
-0.3
+0.1
-2.1
-0.1
-0.2
carbon source
succinate (C)
-0.1
+0.0
-1.8
-0.4
-0.2
carbon source
D-Glucose (C)
-0.2
-0.1
-1.7
-0.4
+0.1
carbon source
L-Malic (C)
+0.1
-0.2
-1.8
-0.2
-0.1
carbon source
pyruvate (C)
-0.1
-0.1
-2.0
+0.1
-0.2
stress
RCH2 defined with copper (II) chloride 0.03 mM
+0.1
-0.6
-1.6
-0.2
+0.0
stress
deoxycholate 0.0125 M
+0.0
-0.3
-2.3
-0.1
+0.7
carbon source
L-Lactate (C)
+0.0
+0.2
-2.0
-0.1
-0.1
stress
Fusidic 0.4 mg/ml
+0.1
-0.3
-1.7
-0.3
+0.4
stress
Bile salts 0.0125 M
-0.2
-0.6
-2.4
+0.5
+0.9
stress
Zinc chloride 0.0000015625 M
-0.2
+0.4
-1.6
+0.1
-0.4
carbon source
m-Inositol (C)
-0.1
+0.0
-1.9
-0.0
+0.3
carbon source
D-Lactate (C)
+0.1
+0.1
-1.8
-0.1
+0.3
carbon source
D-Gluconic Acid (C)
-0.1
+0.1
-1.8
+0.1
+0.2
stress
Hydroxylamine 0.5 M
-0.3
-0.6
-1.0
+0.2
+0.3
carbon source
D,L-Lactate (C)
+0.1
+0.3
-1.7
+0.1
+0.1
motility
inner cut, LB soft agar motility assay
-0.2
+0.3
-1.8
+0.1
+0.5
carbon source
succinate (C)
+0.1
+0.1
-1.7
+0.2
+0.3
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.1
+0.3
-1.4
+0.4
+0.2
stress
pyrophosphate 0.0025 M
+0.1
+0.4
-1.0
+0.2
+0.6
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