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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_2361 and Pf6N2E2_2362 are separated by 475 nucleotides
Pf6N2E2_2362 and Pf6N2E2_2363 overlap by 26 nucleotides
Pf6N2E2_2363 and Pf6N2E2_2364 are separated by 4 nucleotides
Pf6N2E2_2364 and Pf6N2E2_2365 are separated by 8 nucleotides
Pf6N2E2_2361 - Type III secretion chaperone protein for YopD (SycD), at 2,796,383 to 2,796,865
_2361
Pf6N2E2_2362 - Type III secretion inner membrane protein (YscU,SpaS,EscU,HrcU,SsaU, homologous to flagellar export components), at 2,797,341 to 2,798,375
_2362
Pf6N2E2_2363 - Type III secretion inner membrane protein (YscT,HrcT,SpaR,EscT,EpaR1,homologous to flagellar export components), at 2,798,350 to 2,799,153
_2363
Pf6N2E2_2364 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 2,799,158 to 2,799,412
_2364
Pf6N2E2_2365 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 2,799,421 to 2,800,080
_2365
Group
Condition
Pf6N2E2
_2361
Pf6N2E2
_2362
Pf6N2E2
_2363
Pf6N2E2
_2364
Pf6N2E2
_2365
motility
inner cut, LB soft agar motility assay
-0.2
-0.2
-1.3
N.D.
+0.2
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.5
-0.4
-0.2
N.D.
-0.2
stress
Magnesium chloride 0.125 M
+0.0
-0.3
-0.9
N.D.
+0.0
stress
antimonate 0.005 M
-0.0
-0.5
-0.7
N.D.
+0.1
stress
periodate 0.00125 M
+0.4
-1.0
-0.1
N.D.
-0.2
stress
deoxycholate 0.0125 M
+0.2
-0.5
-1.0
N.D.
+0.5
carbon source
m-Inositol (C)
-0.1
-0.7
-0.3
N.D.
+0.3
nitrogen source
L-Serine (N)
-0.3
+0.8
-0.9
N.D.
-0.3
carbon source
Carbon source Sucrose 2.5 mM
-0.4
+0.4
-0.3
N.D.
-0.4
stress
Chlorite 0.00005 M
-0.3
-0.5
+0.4
N.D.
-0.3
stress
RCH2 defined with Zinc 0.016 mM
-0.3
+0.4
-0.7
N.D.
-0.1
stress
Gjerstad humics 0.5 M
-0.5
-0.4
+0.2
N.D.
+0.2
nitrogen source
L-Aspartic Acid (N)
-0.5
-0.3
+0.4
N.D.
+0.0
carbon source
Ying_Nucleobase14 rep C; time point 1
-0.1
-0.8
+0.4
N.D.
+0.2
nitrogen source
L-Serine (N)
-0.7
+0.5
+0.5
N.D.
-0.4
stress
Cobalt chloride 0.6 mM
-0.1
-0.1
+0.8
N.D.
-0.6
nitrogen source
L-Arginine (N)
-0.6
+0.3
+0.4
N.D.
-0.2
vitamin
No vitamins t1
-0.4
-0.1
+0.6
N.D.
-0.2
stress
Nickel (II) chloride 1 mM
-0.5
-0.4
+0.8
N.D.
+0.1
stress
DEANONOate 0.000625 M
-0.4
-0.3
+0.8
N.D.
-0.1
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.5
+0.4
-0.2
N.D.
+0.2
stress
sodium iodate 0.005 M
-0.6
-0.4
+0.6
N.D.
+0.4
nitrogen source
L-Asparagine (N)
-0.5
+0.3
+0.4
N.D.
-0.1
stress
Vancomycin 0.12 mg/ml
+0.1
+0.6
-0.4
N.D.
+0.2
carbon source
L-Arabinose (C)
+0.1
+0.5
-0.4
N.D.
+0.2
stress
bromate 0.05 M
-0.4
+0.1
+0.6
N.D.
+0.2
stress
Nickel (II) chloride 1 mM
-0.3
+0.1
+0.8
N.D.
-0.1
nitrogen source
Putrescine (N)
-0.5
+0.0
+0.9
N.D.
+0.2
nitrogen source
L-Isoleucine (N)
+0.3
+0.1
+0.5
N.D.
-0.2
carbon source
D-Mannose (C)
+0.2
+0.7
-0.3
N.D.
+0.2
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