Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_2336 and Pf6N2E2_2337 overlap by 8 nucleotidesPf6N2E2_2337 and Pf6N2E2_2338 are separated by 154 nucleotidesPf6N2E2_2338 and Pf6N2E2_2339 are separated by 19 nucleotidesPf6N2E2_2339 and Pf6N2E2_2340 are separated by 143 nucleotides Pf6N2E2_2336 - Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A (1.17.1.4), at 2,766,316 to 2,767,770 _2336 Pf6N2E2_2337 - Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4), at 2,767,763 to 2,770,162 _2337 Pf6N2E2_2338 - XdhC protein (assists in molybdopterin insertion into xanthine dehydrogenase), at 2,770,317 to 2,771,159 _2338 Pf6N2E2_2339 - Guanine deaminase (EC 3.5.4.3), at 2,771,179 to 2,772,483 _2339 Pf6N2E2_2340 - Transcriptional regulator, GntR family, at 2,772,627 to 2,773,391 _2340
Group Condition Pf6N2E2_2336 Pf6N2E2_2337 Pf6N2E2_2338 Pf6N2E2_2339 Pf6N2E2_2340
carbon source Ying_Nucleobase14 rep C; time point 3 -1.9 -1.8 -2.3 +0.1 -0.4
carbon source Ying_Nucleobase14 rep B; time point 3 -2.0 -1.5 -2.0 +0.1 -0.1
carbon source Ying_Nucleobase14 rep A; time point 3 -1.7 -1.4 -1.9 +0.2 -0.2
carbon source Ying_Nucleobase14 rep C; time point 2 -1.8 -1.5 -1.5 +0.1 +0.2
carbon source Ying_Nucleobase14 rep A; time point 2 -1.5 -1.5 -1.4 +0.1 +0.3
carbon source Ying_Nucleobase14 rep B; time point 2 -1.4 -1.5 -1.4 +0.1 +0.3
motility inner cut, LB soft agar motility assay +0.0 +0.1 -0.3 +0.1 -3.3
stress tungstate 0.05 M -0.2 +0.0 -0.0 -0.0 -3.0
motility inner cut, LB soft agar motility assay -0.0 +0.1 -0.3 -0.1 -2.6
stress deoxycholate 0.0125 M -0.0 +0.0 +0.1 +0.0 -2.9
stress tungstate 0.05 M +0.1 -0.1 -0.1 +0.1 -2.8
carbon source Putrescine (C) -0.3 +0.0 -0.3 -0.2 -2.0
carbon source Ying_Nucleobase14 rep B; time point 1 -1.2 -1.0 -0.7 +0.0 +0.1
stress Fluorophosphate 0.125 M +0.2 +0.1 -0.1 -0.0 -2.8
nitrogen source Putrescine (N) +0.4 -0.0 +0.1 +0.1 -3.0
carbon source Putrescine (C) -0.1 -0.1 +0.1 -0.1 -2.3
nitrogen source Gly-Glu (N) -0.1 -0.3 -0.3 -0.1 -1.7
stress phosphite 0.25 M -0.0 -0.0 +0.1 -0.1 -2.3
stress thiosulfate 0.25 M +0.3 -0.1 -0.3 -0.0 -2.2
stress DEANONOate 0.000625 M -0.3 +0.2 -0.4 -0.1 -1.7
resistance 50% P. fluorescens FW300-N1B4 spent media from growth in 20 mM putrescine -0.0 -0.2 -0.3 +0.1 -1.8
stress selenite 0.0025 M +0.0 +0.1 -0.2 +0.1 -2.2
nitrogen source L-Isoleucine (N) +0.2 -0.2 -0.0 -0.1 -2.0
carbon source octanoate (C) +0.1 +0.2 +0.2 +0.3 -2.8
carbon source D-Alanine (C) +0.2 +0.1 +0.0 -0.1 -2.0
carbon source Ying_Nucleobase14 rep C; time point 1 -0.5 -1.1 -0.5 +0.1 +0.4
nitrogen source L-Isoleucine (N) +0.3 -0.1 -0.1 +0.3 -1.8
stress Bile salts 0.0125 M +0.9 -0.3 -0.2 +0.0 -1.7
carbon source D-Alanine (C) +0.1 +0.2 +0.4 +0.2 -1.7
nitrogen source nitrogen source nitrite 5mM +0.2 +0.0 +0.2 +0.7 -1.5
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Pf6N2E2_2336
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Pf6N2E2_2337
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Pf6N2E2_2340
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