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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_2283 and Pf6N2E2_2284 are separated by 10 nucleotides
Pf6N2E2_2284 and Pf6N2E2_2285 are separated by 71 nucleotides
Pf6N2E2_2285 and Pf6N2E2_2286 are separated by 106 nucleotides
Pf6N2E2_2286 and Pf6N2E2_2287 are separated by 234 nucleotides
Pf6N2E2_2283 - SOS-response repressor and protease LexA (EC 3.4.21.88), at 2,702,706 to 2,703,314
_2283
Pf6N2E2_2284 - Cell division inhibitor-related protein, at 2,703,325 to 2,703,798
_2284
Pf6N2E2_2285 - FIG00954079: hypothetical protein, at 2,703,870 to 2,704,103
_2285
Pf6N2E2_2286 - FIG00953287: hypothetical protein, at 2,704,210 to 2,704,734
_2286
Pf6N2E2_2287 - DNA topoisomerase I (EC 5.99.1.2), at 2,704,969 to 2,707,581
_2287
Group
Condition
Pf6N2E2
_2283
Pf6N2E2
_2284
Pf6N2E2
_2285
Pf6N2E2
_2286
Pf6N2E2
_2287
carbon source
Trisodium citrate (C)
N.D.
-0.5
-1.2
-4.4
N.D.
carbon source
Trisodium citrate (C)
N.D.
+0.6
-0.3
-5.9
N.D.
carbon source
L-Malic (C)
N.D.
-0.3
-2.0
-1.5
N.D.
stress
Zinc chloride 0.0000015625 M
N.D.
+0.1
-3.6
-0.1
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
N.D.
-0.2
-0.5
-2.6
N.D.
stress
dimethyl sulfone 0.25 M
N.D.
-0.7
-1.4
-0.8
N.D.
nitrogen source
L-Serine (N)
N.D.
-1.5
+0.6
-1.9
N.D.
stress
Chloride 600 mM
N.D.
-1.1
-1.7
+0.0
N.D.
stress
Cisplatin 0.008 mg/ml
N.D.
-0.7
-1.9
-0.2
N.D.
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
N.D.
+0.1
-0.2
-2.6
N.D.
stress
bromate 0.05 M
N.D.
-0.9
-1.2
-0.6
N.D.
carbon source
Carbon source Sucrose 5 mM
N.D.
-0.9
-0.6
-1.3
N.D.
carbon source
RCH2_defined
N.D.
-0.0
-0.7
-2.0
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
N.D.
+0.2
-1.8
-1.1
N.D.
nitrogen source
nitrogen source nitrate 5mM
N.D.
+0.8
-1.1
-2.4
N.D.
vitamin
With vitamins t2
N.D.
-0.4
+0.4
-2.5
N.D.
lb
LB no stress 48 hours
N.D.
-0.4
-2.4
+0.4
N.D.
nitrogen source
L-Serine (N)
N.D.
+0.6
-0.7
-2.1
N.D.
stress
RCH2 defined with Zinc 0.032 mM
N.D.
+0.5
-1.3
-1.4
N.D.
stress
Nickel (II) chloride 0.5 mM
N.D.
-0.1
-2.2
+0.5
N.D.
nitrogen source
L-Alanine (N)
N.D.
+0.8
-1.3
-1.0
N.D.
carbon source
Carbon source Sucrose 2.5 mM
N.D.
-1.1
+0.6
-1.0
N.D.
nitrogen source
nitrogen source nitrate 5mM
N.D.
+1.0
-1.0
-1.3
N.D.
carbon source
Ying_Others16 rep C; time point 3
N.D.
-2.0
+0.5
+0.2
N.D.
vitamin
No vitamins t2
N.D.
-0.2
+1.0
-1.8
N.D.
carbon source
Carbon source Sucrose 10 mM
N.D.
+1.3
+0.8
-0.8
N.D.
carbon source
D-Glucosamine Hydrochloride (C)
N.D.
+0.9
+0.9
+0.9
N.D.
carbon source
D-Fructose (C)
N.D.
+0.6
+1.5
+0.9
N.D.
carbon source
D-Galactose (C)
N.D.
-0.5
+1.7
+2.2
N.D.
carbon source
D-Galactose (C)
N.D.
+0.1
+2.8
+1.8
N.D.
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