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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_2267 and Pf6N2E2_2268 are separated by 698 nucleotides
Pf6N2E2_2268 and Pf6N2E2_2269 are separated by 63 nucleotides
Pf6N2E2_2269 and Pf6N2E2_2270 overlap by 8 nucleotides
Pf6N2E2_2270 and Pf6N2E2_2271 are separated by 57 nucleotides
Pf6N2E2_2267 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 2,681,078 to 2,682,436
_2267
Pf6N2E2_2268 - Lipoprotein releasing system transmembrane protein LolE, at 2,683,135 to 2,684,379
_2268
Pf6N2E2_2269 - Lipoprotein releasing system ATP-binding protein LolD, at 2,684,443 to 2,685,141
_2269
Pf6N2E2_2270 - Lipoprotein releasing system transmembrane protein LolC, at 2,685,134 to 2,686,264
_2270
Pf6N2E2_2271 - FIG00958585: hypothetical protein, at 2,686,322 to 2,686,495
_2271
Group
Condition
Pf6N2E2
_2267
Pf6N2E2
_2268
Pf6N2E2
_2269
Pf6N2E2
_2270
Pf6N2E2
_2271
stress
copper (II) chloride 3 mM
-6.3
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
-2.7
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Serine (N)
-2.6
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with copper (II) chloride 0.03 mM
-2.3
N.D.
N.D.
N.D.
N.D.
nitrogen source
Glucuronamide (N)
-1.4
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-1.3
N.D.
N.D.
N.D.
N.D.
nitrogen source
Glycine (N)
-1.0
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Arginine (N)
-0.9
N.D.
N.D.
N.D.
N.D.
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.9
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Citrulline (N)
-0.9
N.D.
N.D.
N.D.
N.D.
carbon source
L-Asparagine (C)
-0.8
N.D.
N.D.
N.D.
N.D.
stress
molybdate 0.25 M
-0.8
N.D.
N.D.
N.D.
N.D.
carbon source
D-Trehalose (C)
-0.8
N.D.
N.D.
N.D.
N.D.
nitrogen source
L-Lysine (N)
-0.7
N.D.
N.D.
N.D.
N.D.
stress
sodium iodate 0.005 M
-0.7
N.D.
N.D.
N.D.
N.D.
nitrogen source
Cytidine (N)
-0.7
N.D.
N.D.
N.D.
N.D.
stress
rubidium chloride 0.25 M
+0.7
N.D.
N.D.
N.D.
N.D.
stress
pyrophosphate 0.0025 M
+0.7
N.D.
N.D.
N.D.
N.D.
stress
sodium carbonate 0.0125 M
+0.7
N.D.
N.D.
N.D.
N.D.
carbon source
Ying_Others16 rep C; time point 1
+0.7
N.D.
N.D.
N.D.
N.D.
carbon source
L-Arabinose (C)
+0.7
N.D.
N.D.
N.D.
N.D.
stress
Chlorite 0.00005 M
+0.7
N.D.
N.D.
N.D.
N.D.
carbon source
propionate (C)
+0.8
N.D.
N.D.
N.D.
N.D.
stress
Aluminum chloride 0.00005 M
+0.8
N.D.
N.D.
N.D.
N.D.
stress
sodium iodate 0.005 M
+0.8
N.D.
N.D.
N.D.
N.D.
stress
Vanillyl Alcohol 0.005 M
+0.8
N.D.
N.D.
N.D.
N.D.
stress
sodium iodide 0.125 M
+0.8
N.D.
N.D.
N.D.
N.D.
stress
deoxycholate 0.0125 M
+0.9
N.D.
N.D.
N.D.
N.D.
lb
LB no stress 48 hours
+0.9
N.D.
N.D.
N.D.
N.D.
vitamin
With vitamins t2
+1.0
N.D.
N.D.
N.D.
N.D.
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