Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_2004 and Pf6N2E2_2005 overlap by 35 nucleotidesPf6N2E2_2005 and Pf6N2E2_2006 are separated by 11 nucleotidesPf6N2E2_2006 and Pf6N2E2_2007 are separated by 2018 nucleotidesPf6N2E2_2007 and Pf6N2E2_2008 are separated by 143 nucleotides Pf6N2E2_2004 - Cytochrome c551 peroxidase (EC 1.11.1.5), at 2,377,874 to 2,379,013 _2004 Pf6N2E2_2005 - Glycoprotein gp2, at 2,378,979 to 2,382,047 _2005 Pf6N2E2_2006 - Rhs family protein, at 2,382,059 to 2,387,395 _2006 Pf6N2E2_2007 - Error-prone, lesion bypass DNA polymerase V (UmuC), at 2,389,414 to 2,389,854 _2007 Pf6N2E2_2008 - Error-prone, lesion bypass DNA polymerase V (UmuC), at 2,389,998 to 2,390,123 _2008
Group Condition Pf6N2E2_2004 Pf6N2E2_2005 Pf6N2E2_2006 Pf6N2E2_2007 Pf6N2E2_2008
stress deoxycholate 0.0125 M -0.4 -0.2 +0.0 -1.3 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.0 -0.1 -0.1 -1.5 N.D.
nitrogen source nitrogen source nitrite 1mM -0.1 -0.1 +0.0 -1.5 N.D.
nitrogen source nitrogen source nitrite 1mM -0.2 -0.1 +0.0 -1.2 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.4 -0.1 -0.0 -0.9 N.D.
nitrogen source nitrogen source nitrite 0.5mM -0.1 -0.0 -0.0 -1.2 N.D.
vitamin No vitamins t1 -0.3 +0.0 -0.1 -1.0 N.D.
carbon source Carbon source D,L-Lactate 10 mM +0.2 -0.0 -0.0 -1.4 N.D.
nitrogen source L-Serine (N) -0.3 -0.1 +0.1 -1.0 N.D.
carbon source Carbon source D,L-Lactate 10 mM +0.1 +0.0 -0.1 -1.3 N.D.
nitrogen source Glucuronamide (N) -0.6 +0.1 -0.1 -0.6 N.D.
nitrogen source nitrogen source nitrate 20mM -0.1 -0.1 -0.0 -0.9 N.D.
carbon source Carbon source Sucrose 5 mM -0.0 -0.1 -0.0 -1.0 N.D.
nitrogen source L-Serine (N) +0.3 +0.1 -0.0 -1.5 N.D.
carbon source Carbon source D-Glucose 10 mM -0.1 -0.1 -0.1 -1.0 N.D.
stress Nickel (II) chloride 0.0025 M +0.0 +0.1 -0.0 -1.2 N.D.
nitrogen source nitrogen source nitrite 5mM +0.1 -0.0 -0.2 -0.9 N.D.
stress Cobalt chloride 0.4 mM +0.3 -0.1 -0.1 -1.1 N.D.
stress Chloride 0.5 M +0.0 -0.0 +0.2 -1.0 N.D.
stress Cobalt chloride 0.6 mM +0.1 -0.0 -0.1 -0.9 N.D.
stress Nickel (II) chloride 1 mM +0.3 -0.0 -0.1 -1.0 N.D.
stress Cobalt chloride 0.4 mM +0.2 -0.1 -0.0 -0.8 N.D.
stress Nickel (II) chloride 1.5 mM +0.3 +0.0 +0.0 -1.0 N.D.
stress Fusidic 0.4 mg/ml +0.3 +0.0 +0.1 -1.1 N.D.
stress Cobalt chloride 0.6 mM +0.2 +0.0 +0.1 -0.9 N.D.
carbon source D-Galactose (C) -0.2 +0.0 -0.1 +1.0 N.D.
carbon source Ying_Nucleobase14 rep C; time point 3 +0.1 -0.1 -0.0 +1.0 N.D.
stress Zinc chloride 0.0000015625 M +0.5 +0.2 -0.0 +0.8 N.D.
stress Hydroxylamine 0.5 M +0.1 +0.2 +0.1 +1.0 N.D.
stress Rifampicin 0.003 mg/ml +0.1 +0.1 -0.0 +1.3 N.D.
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