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Cofit
Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_2001 and Pf6N2E2_2002 are separated by 1702 nucleotides
Pf6N2E2_2002 and Pf6N2E2_2003 are separated by 471 nucleotides
Pf6N2E2_2003 and Pf6N2E2_2004 are separated by 1486 nucleotides
Pf6N2E2_2004 and Pf6N2E2_2005 overlap by 35 nucleotides
Pf6N2E2_2001 - Nuclease precursor (EC 3.1.30.2), at 2,370,252 to 2,371,277
_2001
Pf6N2E2_2002 - hypothetical protein, at 2,372,980 to 2,374,761
_2002
Pf6N2E2_2003 - hypothetical protein, at 2,375,233 to 2,376,387
_2003
Pf6N2E2_2004 - Cytochrome c551 peroxidase (EC 1.11.1.5), at 2,377,874 to 2,379,013
_2004
Pf6N2E2_2005 - Glycoprotein gp2, at 2,378,979 to 2,382,047
_2005
Group
Condition
Pf6N2E2
_2001
Pf6N2E2
_2002
Pf6N2E2
_2003
Pf6N2E2
_2004
Pf6N2E2
_2005
carbon source
Carbon source D-Glucose 10 mM
-0.4
-0.6
-1.6
-0.1
-0.1
lb
LB no stress 24 hours
-0.0
+0.8
-3.5
+0.0
+0.0
stress
DEANONOate 0.000625 M
-0.1
-0.7
-1.7
+0.0
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
+0.1
-0.0
-1.9
-0.4
-0.1
nitrogen source
Glucuronamide (N)
-0.3
+0.2
-1.6
-0.6
+0.1
stress
molybdate 0.25 M
+0.2
-1.3
-0.7
-0.1
-0.0
carbon source
D-Trehalose (C)
+0.0
+0.2
-2.1
+0.2
-0.2
carbon source
Carbon source Sucrose 5 mM
-0.2
-0.2
-1.4
-0.0
-0.1
carbon source
L-Leucine (C)
+0.4
-0.4
-1.9
+0.1
-0.1
stress
Chloride 600 mM
-0.1
-1.2
-0.6
+0.5
-0.1
stress
sodium fluoride 15 mM
+0.1
-0.3
-1.6
+0.3
+0.0
carbon source
Carbon source Sucrose 5 mM
-0.1
-0.2
-1.5
+0.2
+0.0
stress
Fluorophosphate 0.125 M
-1.4
+0.5
-0.7
+0.3
+0.0
stress
deoxycholate 0.0125 M
+0.0
+0.7
-1.1
-0.4
-0.2
vitamin
No vitamins t1
+0.0
-1.4
+0.7
-0.3
+0.0
stress
Hydroxylamine 0.5 M
+0.7
+0.1
-1.9
+0.1
+0.2
stress
Nickel (II) chloride 0.0025 M
+0.2
+0.3
-1.3
+0.0
+0.1
stress
Chloride 0.5 M
-0.2
+0.8
-1.0
+0.0
-0.0
stress
Nickel (II) chloride 1.5 mM
+0.0
-0.5
+1.1
+0.3
+0.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.3
+0.2
+0.9
-0.3
-0.1
stress
Nickel (II) chloride 1 mM
-0.0
-0.4
+1.3
+0.2
-0.1
stress
bromate 0.05 M
-0.3
-0.3
+1.4
+0.2
+0.0
lb
LB no stress 48 hours
+1.1
-0.2
+0.7
-0.0
+0.1
stress
Nickel (II) chloride 1.5 mM
-0.0
-0.0
+1.9
+0.1
-0.1
stress
Nickel (II) chloride 1.5 mM
+0.1
+0.2
+1.4
+0.1
+0.0
stress
periodate 0.00125 M
+0.5
+0.0
+0.9
+0.2
+0.2
stress
Hydrochloric Acid 0.005 M
+0.4
+0.5
+1.0
+0.0
+0.1
stress
sodium iodate 0.005 M
+0.3
+0.7
+0.8
+0.1
+0.2
stress
Zinc chloride 0.0000015625 M
-0.1
+0.7
+0.9
+0.5
+0.2
stress
Vanillyl Alcohol 0.005 M
+0.4
+0.6
+1.3
+0.1
-0.1
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