Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_1992 and Pf6N2E2_1993 are separated by 160 nucleotidesPf6N2E2_1993 and Pf6N2E2_1994 are separated by 4 nucleotidesPf6N2E2_1994 and Pf6N2E2_1995 overlap by 1 nucleotidesPf6N2E2_1995 and Pf6N2E2_1996 are separated by 809 nucleotides Pf6N2E2_1992 - hypothetical protein, at 2,356,585 to 2,356,728 _1992 Pf6N2E2_1993 - putative exported protein, at 2,356,889 to 2,358,316 _1993 Pf6N2E2_1994 - putative lipoprotein, at 2,358,321 to 2,358,719 _1994 Pf6N2E2_1995 - Type IV secretory pathway, VirB4 components, at 2,358,719 to 2,361,568 _1995 Pf6N2E2_1996 - DNA repair protein RadC, at 2,362,378 to 2,362,872 _1996
Group Condition Pf6N2E2_1992 Pf6N2E2_1993 Pf6N2E2_1994 Pf6N2E2_1995 Pf6N2E2_1996
nitrogen source nitrogen source nitrate 20mM N.D. -0.3 -0.7 -0.4 -0.2
stress RCH2 defined with Nickel (II) chloride 0.04 mM N.D. -0.6 -0.7 -0.3 +0.1
stress deoxycholate 0.0125 M N.D. +0.2 -1.7 +0.1 +0.0
stress RCH2 defined with Zinc 0.032 mM N.D. -0.2 -0.9 +0.1 -0.4
carbon source Ying_Others16 rep C; time point 3 N.D. -0.8 -0.4 -0.0 -0.2
motility inner cut, LB soft agar motility assay N.D. -0.2 -0.7 +0.2 -0.5
nitrogen source nitrogen source nitrite 0.5mM N.D. -0.3 -1.0 +0.1 +0.1
nitrogen source L-Serine (N) N.D. +0.5 -0.9 -0.4 -0.3
stress Bile salts 0.0125 M N.D. +0.2 -1.2 +0.1 -0.1
stress RCH2 defined with Thallium(I) acetate 0.002 mg/ml N.D. -0.2 -1.0 -0.2 +0.3
carbon source RCH2_defined N.D. -0.6 -0.6 +0.1 +0.1
lb LB no stress 48 hours N.D. +0.2 -1.4 +0.1 +0.1
stress Hydroxylamine 0.5 M N.D. -0.9 +0.2 -0.0 -0.2
carbon source Ying_Nucleobase14 rep C; time point 2 N.D. +0.4 -0.8 -0.1 +0.1
nitrogen source nitrogen source nitrate 5mM N.D. -0.3 -0.7 +0.2 +0.2
stress Nickel (II) chloride 1.5 mM N.D. -0.3 -0.5 +0.2 +0.4
nitrogen source Gly-Glu (N) N.D. +0.1 -0.7 +0.4 +0.1
carbon source Ying_Nucleobase14 rep A; time point 2 N.D. +0.3 -0.7 +0.3 +0.1
stress Zinc chloride 0.0000015625 M N.D. +0.2 -0.2 +0.4 -0.5
carbon source Carbon source Sucrose 10 mM N.D. -0.4 +0.6 +0.1 -0.3
carbon source octanoate (C) N.D. -0.6 +0.5 +0.1 +0.3
stress Nalidixic 0.004 mg/ml N.D. -0.2 +0.8 -0.2 -0.1
lb LB no stress 24 hours N.D. -0.6 +0.8 +0.1 +0.1
carbon source Ying_sugar7 rep B; time point 2 N.D. -0.6 +0.6 +0.1 +0.4
stress RCH2 defined with copper (II) chloride 0.03 mM N.D. -0.1 +0.7 -0.4 +0.4
stress RCH2 defined with Cobalt chloride 0.04 mM N.D. +0.2 +0.8 -0.2 +0.4
vitamin With vitamins t1 N.D. -0.1 +0.9 +0.2 +0.2
stress antimonate 0.005 M N.D. +0.0 +0.6 +0.3 +0.4
stress thiosulfate 0.25 M N.D. +0.4 +0.6 +0.4 -0.1
carbon source Ying_sugar7 rep C; time point 2 N.D. +0.2 +1.7 +0.4 -0.0
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Pf6N2E2_1992
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