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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_1897 and Pf6N2E2_1898 overlap by 4 nucleotides
Pf6N2E2_1898 and Pf6N2E2_1899 are separated by 1513 nucleotides
Pf6N2E2_1899 and Pf6N2E2_1900 are separated by 361 nucleotides
Pf6N2E2_1900 and Pf6N2E2_1901 are separated by 105 nucleotides
Pf6N2E2_1897 - Cytochrome B561, at 2,247,366 to 2,247,944
_1897
Pf6N2E2_1898 - Catalase (EC 1.11.1.6), at 2,247,941 to 2,249,023
_1898
Pf6N2E2_1899 - Dienelactone hydrolase and related enzymes, at 2,250,537 to 2,251,511
_1899
Pf6N2E2_1900 - hypothetical protein, at 2,251,873 to 2,252,337
_1900
Pf6N2E2_1901 - Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140), at 2,252,443 to 2,253,186
_1901
Group
Condition
Pf6N2E2
_1897
Pf6N2E2
_1898
Pf6N2E2
_1899
Pf6N2E2
_1900
Pf6N2E2
_1901
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.7
-0.6
-0.5
-0.4
+0.1
carbon source
D-Glucosamine Hydrochloride (C)
-0.5
-0.4
-0.3
-0.6
-0.1
carbon source
Ying_Others16 rep A; time point 1
-0.3
-0.4
-0.0
-1.0
+0.1
carbon source
D-Alanine (C)
-0.5
-0.4
-0.3
-0.2
-0.2
carbon source
Ying_sugar7 rep B; time point 2
-0.5
-0.5
-0.2
-0.3
+0.0
carbon source
Ying_OrganicAcid7 rep B; time point 2
-0.3
-0.3
-0.0
-0.9
+0.1
nitrogen source
nitrogen source nitrite 1mM
-0.2
-0.8
-0.2
-0.3
+0.1
carbon source
Ying_sugar7 rep B; time point 1
-0.1
-0.5
+0.1
-0.8
-0.0
carbon source
D-Galactose (C)
+0.2
-0.7
-0.5
-0.2
-0.2
carbon source
D-Glucose (C)
-0.4
-0.4
-0.3
-0.1
-0.2
carbon source
Ying_AminoAcid20 rep A; time point 2
-0.0
-0.6
+0.0
-0.7
+0.0
carbon source
Ying_Nucleobase14 rep A; time point 2
-0.0
-0.6
+0.1
-0.8
-0.1
carbon source
octanoate (C)
-0.1
-0.1
-0.0
-0.5
-0.6
carbon source
Glycerol (C)
-0.2
-0.5
-0.3
-0.2
-0.1
carbon source
D-Xylose (C)
-0.2
-0.2
-0.3
-0.3
-0.3
carbon source
Ying_Nucleobase14 rep C; time point 2
-0.4
-0.3
+0.1
-0.7
+0.2
stress
Chloride 600 mM
-0.6
-0.3
+0.2
-0.2
-0.3
carbon source
Ying_AminoAcid20 rep C; time point 2
-0.3
+0.0
+0.2
-1.0
-0.1
stress
Fluorophosphate 0.125 M
-0.6
-0.5
-0.3
+0.2
+0.0
stress
Nickel (II) chloride 1 mM
+0.0
-0.5
-0.2
-0.4
+0.1
nitrogen source
nitrogen source nitrite 1mM
-0.5
-0.6
+0.1
+0.2
-0.0
nitrogen source
nitrogen source nitrate 20mM
+0.2
-0.3
-0.1
-0.7
+0.1
stress
Nickel (II) chloride 0.0025 M
-0.6
-0.4
+0.3
-0.0
+0.1
stress
periodate 0.00125 M
+0.2
+0.3
-0.6
+0.1
+0.1
nitrogen source
Glucuronamide (N)
-0.5
+0.2
+0.4
+0.1
+0.2
carbon source
L-Leucine (C)
+0.6
+0.5
-0.5
-0.0
-0.2
nitrogen source
Cytidine (N)
-0.4
+0.5
-0.0
+0.3
+0.1
stress
Nickel (II) chloride 1.5 mM
+0.3
+0.2
-0.2
-0.2
+0.4
stress
Hydroxylamine 0.5 M
+0.5
+0.5
-0.2
+0.2
-0.0
stress
Cobalt chloride 0.6 mM
+0.6
+0.2
-0.1
+0.1
+0.5
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