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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_1868 and Pf6N2E2_1869 are separated by 822 nucleotides
Pf6N2E2_1869 and Pf6N2E2_1870 are separated by 788 nucleotides
Pf6N2E2_1870 and Pf6N2E2_1871 are separated by 83 nucleotides
Pf6N2E2_1871 and Pf6N2E2_1872 are separated by 3 nucleotides
Pf6N2E2_1868 - hypothetical protein, at 2,213,819 to 2,214,892
_1868
Pf6N2E2_1869 - hypothetical protein, at 2,215,715 to 2,215,939
_1869
Pf6N2E2_1870 - hypothetical protein, at 2,216,728 to 2,217,258
_1870
Pf6N2E2_1871 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 2,217,342 to 2,217,875
_1871
Pf6N2E2_1872 - hypothetical protein, at 2,217,879 to 2,218,154
_1872
Group
Condition
Pf6N2E2
_1868
Pf6N2E2
_1869
Pf6N2E2
_1870
Pf6N2E2
_1871
Pf6N2E2
_1872
stress
Aluminum chloride 4 mM
-0.2
-0.1
-2.9
-0.2
N.D.
nitrogen source
L-Serine (N)
-0.1
-0.3
-2.3
-0.0
N.D.
nitrogen source
nitrogen source nitrite 1mM
+0.0
-1.0
-1.8
+0.1
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 3
+0.1
+0.1
-2.9
+0.0
N.D.
carbon source
Carbon source Sucrose 2.5 mM
-0.2
-0.6
-1.7
-0.1
N.D.
nitrogen source
nitrogen source nitrate 20mM
-0.3
-0.5
-1.8
+0.1
N.D.
carbon source
Carbon source Sucrose 10 mM
-0.2
-0.2
-2.0
+0.0
N.D.
carbon source
Carbon source D-Glucose 10 mM
-0.1
-0.2
-1.8
-0.1
N.D.
nitrogen source
L-Glutamine (N)
-0.1
-0.1
-1.7
-0.4
N.D.
carbon source
propionate (C)
-0.1
-0.4
-1.5
-0.2
N.D.
carbon source
Carbon source Sucrose 10 mM
-0.2
-0.4
-1.7
+0.0
N.D.
carbon source
Carbon source Sucrose 2.5 mM
-0.3
-0.5
-1.4
+0.0
N.D.
carbon source
octanoate (C)
-0.3
-0.9
-1.1
+0.1
N.D.
motility
inner cut, LB soft agar motility assay
+0.1
-0.2
-2.4
+0.4
N.D.
nitrogen source
L-Aspartic Acid (N)
+0.0
+0.3
-1.8
-0.5
N.D.
nitrogen source
nitrogen source nitrite 5mM
-0.1
-1.4
-0.5
+0.0
N.D.
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.1
-0.4
-1.0
-0.3
N.D.
carbon source
D-Trehalose (C)
+0.2
-0.6
-0.7
-0.7
N.D.
stress
Magnesium chloride 0.125 M
-0.0
-0.3
-0.8
-0.6
N.D.
nitrogen source
L-Glutamic (N)
+0.2
-0.3
-1.4
-0.1
N.D.
nitrogen source
nitrogen source nitrite 0.5mM
+0.0
-1.6
-0.0
+0.1
N.D.
stress
RCH2 defined with Cobalt chloride 0.04 mM
+0.2
-1.0
-0.7
+0.0
N.D.
carbon source
Ying_OrganicAcid7 rep C; time point 2
-0.1
+0.3
-1.0
-0.6
N.D.
nitrogen source
L-Citrulline (N)
-0.0
+0.1
-1.5
+0.2
N.D.
nitrogen source
L-Glutamine (N)
+0.0
+0.4
-1.3
-0.3
N.D.
nitrogen source
L-Asparagine (N)
+0.0
+0.5
-1.4
-0.2
N.D.
stress
RCH2 defined with Cobalt chloride 0.02 mM
-0.2
+0.5
-1.4
+0.1
N.D.
motility
outer cut, LB soft agar motility assay
+0.0
-0.6
+0.9
-0.4
N.D.
lb
LB no stress 48 hours
+0.2
+0.6
+0.8
-0.7
N.D.
vitamin
No vitamins t2
+0.1
+0.3
+1.6
-0.1
N.D.
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