Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_1730 and Pf6N2E2_1731 are separated by 33 nucleotidesPf6N2E2_1731 and Pf6N2E2_1732 are separated by 345 nucleotidesPf6N2E2_1732 and Pf6N2E2_1733 are separated by 23 nucleotidesPf6N2E2_1733 and Pf6N2E2_1734 are separated by 166 nucleotides Pf6N2E2_1730 - Quinone oxidoreductase (EC 1.6.5.5), at 2,042,533 to 2,043,507 _1730 Pf6N2E2_1731 - Transcriptional regulator, LysR family, at 2,043,541 to 2,044,464 _1731 Pf6N2E2_1732 - hypothetical protein, at 2,044,810 to 2,045,049 _1732 Pf6N2E2_1733 - Oligopeptide transporter, OPT family, at 2,045,073 to 2,046,818 _1733 Pf6N2E2_1734 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 2,046,985 to 2,047,392 _1734
Group Condition Pf6N2E2_1730 Pf6N2E2_1731 Pf6N2E2_1732 Pf6N2E2_1733 Pf6N2E2_1734
stress Bile salts 0.0125 M -0.3 -0.2 -1.1 +0.3 -0.4
carbon source Ying_Nucleobase14 rep B; time point 2 -0.2 -0.0 -0.4 -0.1 -0.7
stress Nickel (II) chloride 0.0025 M -0.1 +0.1 -1.0 -0.1 -0.3
stress Cobalt chloride 0.4 mM -0.2 +0.2 -0.7 +0.0 -0.5
stress Vanillyl Alcohol 0.005 M +0.2 -0.3 -1.0 -0.0 -0.1
motility outer cut, LB soft agar motility assay +0.5 -0.1 -1.3 -0.2 +0.1
stress RCH2 defined with Cobalt chloride 0.04 mM -0.5 -0.1 -1.0 +0.4 +0.4
nitrogen source L-Glutamine (N) -0.3 -0.1 -0.6 +0.1 +0.2
nitrogen source L-Lysine (N) +0.3 -0.3 -0.6 -0.3 +0.2
stress Chloride 600 mM -0.2 -0.1 -0.8 +0.1 +0.4
stress Gjerstad humics 0.5 M -0.4 -0.1 +0.4 +0.2 -0.4
stress Chloride 0.5 M -0.2 +0.1 +0.6 +0.2 -1.0
stress sodium iodate 0.005 M +0.2 -0.1 -0.1 +0.5 -0.6
carbon source D-Trehalose (C) +0.2 -0.2 +0.5 -0.4 -0.3
stress RCH2 defined with copper (II) chloride 0.03 mM -0.1 -0.2 -0.4 +0.1 +0.7
vitamin With vitamins t2 -0.5 -0.2 +0.1 -0.0 +0.8
motility outer cut, LB soft agar motility assay +0.6 -0.2 +0.4 -0.1 -0.5
stress thiosulfate 0.25 M -0.2 +0.1 +0.6 +0.2 -0.5
stress phosphite 0.25 M +0.1 -0.1 +0.4 +0.4 -0.4
stress bromate 0.05 M +0.2 -0.1 +0.4 +0.4 -0.3
vitamin No vitamins t2 -0.5 +0.0 +0.3 -0.3 +1.3
nitrogen source nitrogen source nitrate 20mM -0.2 +0.5 +0.7 -0.2 +0.1
motility inner cut, LB soft agar motility assay +1.1 -0.2 +0.1 +0.1 -0.2
carbon source D-Galactose (C) +0.6 +0.0 +0.5 -0.3 +0.1
motility inner cut, LB soft agar motility assay +1.1 +0.2 -0.3 -0.1 +0.1
vitamin No vitamins t1 -0.2 +0.2 +0.2 -0.0 +0.8
stress Zinc chloride 0.0000015625 M +0.6 +0.3 -0.2 +0.4 -0.0
stress DEANONOate 0.000625 M -0.3 +0.1 +0.5 +0.4 +0.5
carbon source D-Galactose (C) +0.7 +0.0 +0.6 -0.2 +0.1
vitamin With vitamins t1 -0.1 +0.1 +0.6 +0.0 +1.0
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