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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_1674 and Pf6N2E2_1675 are separated by 30 nucleotides
Pf6N2E2_1675 and Pf6N2E2_1676 are separated by 10 nucleotides
Pf6N2E2_1676 and Pf6N2E2_1677 are separated by 157 nucleotides
Pf6N2E2_1677 and Pf6N2E2_1678 are separated by 121 nucleotides
Pf6N2E2_1674 - Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10), at 1,980,108 to 1,981,190
_1674
Pf6N2E2_1675 - Lipid carrier protein or keto acyl-CoA thiolase Ltp3 (EC 2.3.1.16), at 1,981,221 to 1,982,417
_1675
Pf6N2E2_1676 - conserved protein associated with acetyl-CoA C-acyltransferase, at 1,982,428 to 1,982,868
_1676
Pf6N2E2_1677 - Chalcone synthase (EC 2.3.1.74), at 1,983,026 to 1,984,075
_1677
Pf6N2E2_1678 - Major facilitator family transporter, at 1,984,197 to 1,985,468
_1678
Group
Condition
Pf6N2E2
_1674
Pf6N2E2
_1675
Pf6N2E2
_1676
Pf6N2E2
_1677
Pf6N2E2
_1678
stress
Bile salts 0.0125 M
-0.3
-0.1
-3.0
+0.9
-0.2
nitrogen source
Putrescine (N)
+1.1
+0.9
+0.9
+0.7
+0.6
resistance
50% P. fluorescens FW300-N2E2 spent media from growth in 20 mM putrescine
+0.9
+0.9
+0.7
+1.0
+0.7
nitrogen source
nitrogen source nitrite 1mM
+1.0
+1.0
+0.8
+0.7
+0.7
stress
DEANONOate 0.000625 M
+1.4
+0.6
+1.1
+0.9
+0.2
nitrogen source
Cytosine (N)
+1.5
+1.2
+0.2
+0.6
+0.9
nitrogen source
Uridine (N)
+1.0
+0.9
+0.9
+1.2
+0.6
vitamin
No vitamins t2
+1.0
+0.9
+0.6
+1.7
+0.6
denitrifying
Nitrate reduction, replicate C
+1.3
+1.0
+0.8
+1.0
+0.8
nitrogen source
Urea (N)
+1.1
+1.2
+0.9
+1.1
+0.7
vitamin
With vitamins t2
+1.1
+0.6
+1.3
+1.7
+0.4
stress
copper (II) chloride 3 mM
+1.3
+1.0
+1.0
+1.0
+0.9
nitrogen source
Putrescine (N)
+1.2
+1.1
+0.9
+0.9
+1.0
nitrogen source
nitrogen source nitrite 1mM
+1.2
+1.1
+1.7
+1.1
+0.6
nitrogen source
nitrogen source nitrate 5mM
+1.5
+1.7
+0.6
+1.4
+0.8
nitrogen source
nitrogen source Ammonium chloride 20mM
+1.4
+1.5
+1.5
+1.1
+0.6
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate C
+1.5
+1.6
+1.0
+1.3
+1.3
nitrogen source
nitrogen source nitrate 20mM
+1.6
+1.6
+2.1
+1.5
+0.8
nitrogen source
nitrogen source nitrate 20mM
+1.5
+1.6
+2.5
+1.3
+0.7
nitrogen source
Cytidine (N)
+2.1
+1.6
+1.1
+1.7
+1.2
nitrogen source
nitrogen source nitrate 5mM
+1.4
+1.6
+2.2
+1.5
+1.1
nitrogen source
Cytosine (N)
+2.5
+2.4
+1.1
+1.5
+1.1
motility
inner cut, LB soft agar motility assay
+2.6
+2.5
+1.3
+1.3
+1.2
nitrogen source
Cytidine (N)
+2.5
+2.3
+1.1
+2.0
+1.7
nitrogen source
nitrogen source Ammonium chloride 20mM
+2.3
+2.2
+2.2
+1.7
+1.4
motility
inner cut, LB soft agar motility assay
+2.6
+2.5
+2.0
+2.0
+1.4
motility
inner cut, LB soft agar motility assay
+2.6
+2.5
+2.6
+1.8
+1.3
stress
periodate 0.00125 M
+3.4
+3.0
+1.0
+3.4
+0.3
motility
outer cut, LB soft agar motility assay
+2.6
+3.1
+2.3
+1.9
+1.4
motility
outer cut, LB soft agar motility assay
+3.1
+3.1
+2.6
+1.9
+1.2
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