Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_1661 and Pf6N2E2_1662 are separated by 132 nucleotidesPf6N2E2_1662 and Pf6N2E2_1663 are separated by 31 nucleotidesPf6N2E2_1663 and Pf6N2E2_1664 overlap by 4 nucleotidesPf6N2E2_1664 and Pf6N2E2_1665 overlap by 6 nucleotides Pf6N2E2_1661 - RND efflux system, inner membrane transporter CmeB, at 1,965,742 to 1,968,837 _1661 Pf6N2E2_1662 - 5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase., at 1,968,970 to 1,969,818 _1662 Pf6N2E2_1663 - 2-keto-3-deoxy-L-fuconate dehydrogenase, at 1,969,850 to 1,970,590 _1663 Pf6N2E2_1664 - Nitrate/nitrite transporter, at 1,970,587 to 1,971,969 _1664 Pf6N2E2_1665 - hypothetical protein, at 1,971,964 to 1,972,113 _1665
Group Condition Pf6N2E2_1661 Pf6N2E2_1662 Pf6N2E2_1663 Pf6N2E2_1664 Pf6N2E2_1665
carbon source D-Xylose (C) -0.0 -0.1 -0.7 -3.0 -3.8
carbon source D-Xylose (C) -0.3 +0.1 -0.9 -2.2 -2.5
stress Spectinomycin 0.01 mg/ml -3.8 -0.3 -0.4 -0.1 -0.1
stress Spectinomycin 0.0125 mg/ml -3.3 -0.2 -0.1 +0.0 -0.0
stress Zinc chloride 0.0000015625 M -0.2 -0.9 -1.5 -0.1 -0.1
stress Hydroxylamine 0.5 M -0.2 -0.9 -0.8 -0.2 -0.5
stress Tetracycline 0.0004 mg/ml -1.8 -0.3 -0.4 -0.1 +0.3
stress Lomefloxacin 0.0002 mM -2.2 -0.1 -0.1 +0.0 +0.3
stress dimethyl sulfone 0.25 M -0.6 -0.5 -0.0 -0.0 -0.7
stress Nickel (II) chloride 1 mM -0.5 -0.2 -0.1 -0.1 -0.9
carbon source Ying_sugar7 rep B; time point 2 -0.6 -0.1 -0.8 +0.4 -0.5
lb LB no stress 48 hours -0.1 -0.7 -0.4 +0.4 -0.4
carbon source Ying_Others16 rep A; time point 3 -0.1 -0.0 -0.3 -1.1 +0.3
stress Cobalt chloride 0.6 mM -1.2 -0.2 -0.1 +0.1 +0.4
stress Cobalt chloride 0.6 mM -0.5 +0.5 -0.4 -0.3 -0.1
stress Cobalt chloride 0.6 mM -1.1 +0.7 -0.2 -0.3 +0.1
carbon source Ying_Others16 rep C; time point 2 -0.0 +0.4 +0.2 -0.4 -0.9
stress deoxycholate 0.0125 M +0.3 -0.6 +0.1 +0.5 -0.7
stress Nickel (II) chloride 1 mM -0.5 +0.1 -0.1 -0.4 +0.6
carbon source Ying_all64 rep A; time point 3 +0.0 +0.2 -0.3 -1.0 +0.7
stress Aluminum chloride 4 mM +0.3 -0.4 -0.4 -0.3 +0.5
stress Nickel (II) chloride 1.5 mM -0.3 +0.6 -0.5 -0.4 +0.4
carbon source Ying_all64 rep B; time point 3 +0.0 +0.2 -0.1 -0.9 +0.6
carbon source Ying_AminoAcid20 rep C; time point 2 +0.1 +0.4 +0.4 -0.5 -0.6
nitrogen source nitrogen source nitrate 5mM +0.2 -0.4 -0.6 +0.4 +0.5
vitamin No vitamins t2 -0.3 -0.3 -0.5 +0.2 +1.1
stress Chloride 0.5 M +0.3 -1.0 +0.2 +0.0 +0.7
stress Cobalt chloride 0.6 mM -0.7 +0.3 +0.0 +0.3 +0.7
stress DEANONOate 0.000625 M +0.5 -0.4 +0.9 -0.0 -0.2
motility inner cut, LB soft agar motility assay +0.1 -0.5 +0.2 +0.5 +0.7
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