Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_1640 and Pf6N2E2_1641 are separated by 330 nucleotidesPf6N2E2_1641 and Pf6N2E2_1642 are separated by 3 nucleotidesPf6N2E2_1642 and Pf6N2E2_1643 are separated by 96 nucleotidesPf6N2E2_1643 and Pf6N2E2_1644 are separated by 69 nucleotides Pf6N2E2_1640 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 1,941,969 to 1,944,341 _1640 Pf6N2E2_1641 - Chemotaxis protein CheC -- inhibitor of MCP methylation, at 1,944,672 to 1,945,670 _1641 Pf6N2E2_1642 - diguanylate cyclase (GGDEF domain) with PAS/PAC sensor, at 1,945,674 to 1,946,627 _1642 Pf6N2E2_1643 - Trehalase (EC 3.2.1.28); Periplasmic trehalase precursor (EC 3.2.1.28), at 1,946,724 to 1,948,367 _1643 Pf6N2E2_1644 - hypothetical protein, at 1,948,437 to 1,949,315 _1644
Group Condition Pf6N2E2_1640 Pf6N2E2_1641 Pf6N2E2_1642 Pf6N2E2_1643 Pf6N2E2_1644
stress RCH2 defined with Nickel (II) chloride 0.04 mM -0.2 -1.3 -0.1 -0.2 -0.2
stress phosphite 0.25 M -0.5 -0.4 +0.0 -0.3 -0.5
stress Chloride 600 mM -0.3 -0.8 -0.4 +0.0 +0.0
vitamin No vitamins t1 -0.1 -1.2 +0.2 -0.1 -0.2
stress Cobalt chloride 0.4 mM -0.1 -0.9 -0.1 +0.1 -0.4
stress DEANONOate 0.000625 M -0.5 -0.6 -0.3 +0.3 -0.1
carbon source Ying_AminoAcid20 rep C; time point 3 -0.4 -0.3 -0.3 +0.0 -0.1
stress RCH2 defined with Cobalt chloride 0.02 mM -0.1 -0.9 -0.2 -0.1 +0.2
carbon source Carbon source Sucrose 5 mM -0.0 -0.7 +0.1 +0.0 -0.4
stress Magnesium chloride 0.125 M +0.2 -0.5 -0.1 -0.4 -0.1
stress Cisplatin 0.008 mg/ml +0.2 -0.8 -0.2 +0.1 -0.4
nitrogen source Gly-Glu (N) -0.2 -0.3 -0.3 -0.1 +0.2
nitrogen source Cytidine (N) -0.4 -0.4 -0.2 +0.1 +0.2
nitrogen source nitrogen source nitrite 0.5mM -0.3 -0.1 -0.4 -0.2 +0.3
stress RCH2 defined with Cobalt chloride 0.04 mM -0.1 -0.3 -0.5 +0.3 -0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.4 +0.3 -0.1 -0.3
carbon source RCH2_defined -0.0 -0.6 -0.2 -0.1 +0.4
stress Manganese (II) chloride tetrahydrate 0.00078125 M -0.3 -0.2 -0.3 -0.0 +0.4
stress Cobalt chloride 0.6 mM -0.0 +0.1 -0.6 -0.2 +0.3
stress RCH2 defined with Cobalt chloride 0.02 mM +0.1 -0.6 -0.3 +0.1 +0.4
vitamin With vitamins t2 +0.0 -0.6 -0.2 +0.2 +0.2
stress RCH2 defined with copper (II) chloride 0.03 mM +0.3 -0.3 -0.3 -0.2 +0.4
carbon source octanoate (C) -0.1 -0.2 +0.1 -0.3 +0.5
carbon source D-Trehalose (C) +0.3 -0.2 +0.4 -0.6 +0.3
carbon source D-Trehalose (C) +0.1 +0.4 +0.4 -0.8 +0.1
carbon source Ying_sugar7 rep C; time point 1 +0.2 +0.3 -0.2 +0.2 +0.4
carbon source Ying_sugar7 rep C; time point 2 +0.3 -0.1 +0.4 +0.1 +0.3
stress deoxycholate 0.0125 M -0.2 +0.3 +0.3 +0.4 +0.2
stress Nickel (II) chloride 0.0025 M +0.3 +0.2 +0.4 +0.0 +0.4
stress Zinc chloride 0.0000015625 M +0.3 +0.5 +0.4 -0.1 +0.1
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