Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_161 and Pf6N2E2_162 are separated by 58 nucleotidesPf6N2E2_162 and Pf6N2E2_163 overlap by 4 nucleotidesPf6N2E2_163 and Pf6N2E2_164 are separated by 3 nucleotidesPf6N2E2_164 and Pf6N2E2_165 are separated by 23 nucleotides Pf6N2E2_161 - Ribose ABC transport system, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1), at 214,281 to 215,237 _161 Pf6N2E2_162 - Ribose ABC transport system, ATP-binding protein RbsA (TC 3.A.1.2.1), at 215,296 to 216,849 _162 Pf6N2E2_163 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 216,846 to 217,823 _163 Pf6N2E2_164 - Ribose operon repressor, at 217,827 to 218,846 _164 Pf6N2E2_165 - Ribokinase (EC 2.7.1.15), at 218,870 to 219,784 _165
Group Condition Pf6N2E2_161 Pf6N2E2_162 Pf6N2E2_163 Pf6N2E2_164 Pf6N2E2_165
carbon source Ying_Nucleobase14 rep A; time point 3 -0.1 -1.9 -2.2 -2.1 -0.9
carbon source Ying_Nucleobase14 rep B; time point 3 -0.0 -1.8 -2.3 -2.0 -0.8
carbon source Ying_Nucleobase14 rep C; time point 3 -0.0 -1.8 -2.1 -2.0 -0.8
carbon source Ying_Nucleobase14 rep B; time point 2 -0.2 -1.3 -1.9 -1.2 -1.1
carbon source Ying_Nucleobase14 rep C; time point 2 -0.2 -1.2 -1.8 -1.3 -1.1
carbon source Ying_Nucleobase14 rep A; time point 2 -0.2 -1.4 -1.7 -1.0 -1.0
carbon source Ying_all64 rep C; time point 3 -0.1 -0.9 -0.7 -1.1 -0.9
carbon source Ying_all64 rep B; time point 3 -0.1 -0.9 -0.7 -0.9 -0.9
nitrogen source nitrogen source nitrate 20mM -1.3 -0.1 -1.8 +0.1 -0.0
carbon source L-Leucine (C) -0.8 +0.1 -0.4 -0.9 -1.0
carbon source Ying_all64 rep A; time point 3 -0.0 -0.6 -0.7 -0.9 -0.8
nitrogen source L-Phenylalanine (N) -0.3 -0.4 -0.2 -0.8 -0.9
carbon source Ying_Nucleobase14 rep B; time point 1 -0.2 -0.4 -0.7 -0.3 -1.0
stress Nickel (II) chloride 1 mM -0.4 -0.5 -1.0 +0.3 -0.7
stress thiosulfate 0.25 M +0.7 -0.6 -0.6 +0.1 -1.2
stress Hydroxylamine 0.5 M -2.2 -0.1 +0.0 +0.3 +0.5
nitrogen source nitrogen source nitrite 5mM -1.5 -0.4 +0.2 -0.3 +0.6
vitamin No vitamins t2 +0.3 -0.3 -1.1 -0.4 +0.6
carbon source D-Xylose (C) -0.3 -0.4 -0.3 +1.1 +0.8
nitrogen source L-Serine (N) -0.4 +0.3 +0.6 +0.9 -0.6
nitrogen source Glucuronamide (N) +0.2 +0.1 +1.1 +0.6 -0.6
carbon source D-Galactose (C) +0.2 +0.5 +0.5 +1.2 +0.3
carbon source casaminos (C) +0.7 +0.2 +0.5 +0.7 +0.9
carbon source D-Galactose (C) +0.1 +0.6 +0.4 +1.3 +0.8
stress Nickel (II) chloride 1.5 mM +1.4 +0.9 +0.9 +0.1 +0.8
stress Nickel (II) chloride 1.5 mM +1.9 +1.6 +1.9 +0.4 +1.7
stress Nickel (II) chloride 1.5 mM +1.9 +1.7 +2.1 +0.1 +1.9
nitrogen source Gly-Glu (N) +1.0 +1.0 +1.8 +2.0 +2.5
stress Nickel (II) chloride 1.5 mM +1.9 +1.8 +2.2 +0.3 +2.3
nitrogen source Gly-Glu (N) +1.4 +0.8 +1.5 +2.1 +3.2
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