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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_1622 and Pf6N2E2_1623 are separated by 157 nucleotides
Pf6N2E2_1623 and Pf6N2E2_1624 are separated by 36 nucleotides
Pf6N2E2_1624 and Pf6N2E2_1625 are separated by 203 nucleotides
Pf6N2E2_1625 and Pf6N2E2_1626 are separated by 7 nucleotides
Pf6N2E2_1622 - Methyl-accepting chemotaxis protein, at 1,896,899 to 1,898,869
_1622
Pf6N2E2_1623 - Siderophore biosynthesis diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76), at 1,899,027 to 1,900,457
_1623
Pf6N2E2_1624 - MbtH-like protein, at 1,900,494 to 1,900,709
_1624
Pf6N2E2_1625 - Ferric reductase (1.6.99.14), at 1,900,913 to 1,901,650
_1625
Pf6N2E2_1626 - Putative ATP-binding component of a transport system, at 1,901,658 to 1,903,301
_1626
Group
Condition
Pf6N2E2
_1622
Pf6N2E2
_1623
Pf6N2E2
_1624
Pf6N2E2
_1625
Pf6N2E2
_1626
stress
molybdate 0.25 M
-0.0
-0.2
-0.7
-3.7
-2.6
stress
copper (II) chloride 3 mM
+0.1
-0.1
-0.3
-2.3
-4.2
stress
tungstate 0.05 M
+0.1
+0.0
-0.4
-3.6
-2.6
motility
inner cut, LB soft agar motility assay
+0.1
-0.2
-0.5
-3.9
-0.8
stress
tungstate 0.05 M
+0.2
-0.0
-0.0
-2.1
-3.0
motility
inner cut, LB soft agar motility assay
-0.8
-0.2
-0.2
-2.5
-1.1
carbon source
propionate (C)
+0.1
+0.1
-0.4
-2.4
-2.0
motility
outer cut, LB soft agar motility assay
-0.0
-0.2
-1.1
-2.0
-1.0
carbon source
propionate (C)
+0.0
-0.1
-0.0
-1.8
-2.4
stress
Cobalt chloride 0.6 mM
-0.4
+0.0
-0.0
-1.8
-1.8
stress
Nickel (II) chloride 0.0025 M
+0.1
-0.5
+0.2
-1.6
-2.1
stress
molybdate 0.25 M
+0.1
+0.0
-1.0
-1.1
-1.8
stress
Nickel (II) chloride 0.0025 M
+0.3
-0.2
+0.4
-2.5
-1.6
nitrogen source
Glucuronamide (N)
-0.1
+0.3
-0.6
-2.3
-0.5
stress
4-Hydroxyacetophenone 0.00025 M
+0.2
+0.1
-0.4
-1.7
-1.5
motility
outer cut, LB soft agar motility assay
+0.4
-0.0
-0.3
-2.2
-1.0
stress
Nickel (II) chloride 1 mM
+0.4
-0.3
+0.2
-2.2
-1.1
stress
Nickel (II) chloride 1.5 mM
+0.3
-0.3
-0.0
-1.8
-1.0
stress
Nickel (II) chloride 1 mM
+0.2
-0.1
+0.2
-1.9
-1.0
stress
Cobalt chloride 0.6 mM
+0.2
-0.6
+0.4
-1.6
-0.9
stress
Cobalt chloride 0.6 mM
-0.1
+0.4
+0.5
-1.8
-1.4
stress
Zinc chloride 0.0000015625 M
+0.3
-0.0
+0.8
-1.1
-1.2
carbon source
D-Xylose (C)
-0.1
-0.2
+0.2
+2.0
+1.4
carbon source
D-Xylose (C)
+0.1
+0.2
+0.0
+1.5
+1.5
carbon source
Glycerol (C)
-0.1
+0.0
+0.1
+1.6
+1.8
stress
Phosphomycin 0.004 mg/ml
+0.1
-0.4
-0.2
+2.2
+2.4
carbon source
m-Inositol (C)
-0.2
+0.1
+0.1
+3.2
+2.2
carbon source
D-Fructose (C)
+0.4
-0.2
-0.0
+3.7
+3.4
carbon source
D-Galactose (C)
-0.2
-0.2
+0.4
+3.5
+5.4
carbon source
D-Galactose (C)
-0.2
-0.5
+0.0
+4.1
+5.5
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