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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_1567 and Pf6N2E2_1568 overlap by 4 nucleotides
Pf6N2E2_1568 and Pf6N2E2_1569 overlap by 11 nucleotides
Pf6N2E2_1569 and Pf6N2E2_1570 overlap by 22 nucleotides
Pf6N2E2_1570 and Pf6N2E2_1571 are separated by 10 nucleotides
Pf6N2E2_1567 - FIG00964846: hypothetical protein, at 1,829,310 to 1,830,194
_1567
Pf6N2E2_1568 - FIG00960890: hypothetical protein, at 1,830,191 to 1,831,420
_1568
Pf6N2E2_1569 - FIG00957800: hypothetical protein, at 1,831,410 to 1,832,855
_1569
Pf6N2E2_1570 - Sll1359 protein, at 1,832,834 to 1,833,976
_1570
Pf6N2E2_1571 - FIG00966665: hypothetical protein, at 1,833,987 to 1,836,371
_1571
Group
Condition
Pf6N2E2
_1567
Pf6N2E2
_1568
Pf6N2E2
_1569
Pf6N2E2
_1570
Pf6N2E2
_1571
motility
outer cut, LB soft agar motility assay
-0.6
-0.8
-0.5
-0.3
-0.3
motility
inner cut, LB soft agar motility assay
-0.3
-0.5
-0.3
-0.4
-0.1
vitamin
No vitamins t1
-0.5
-0.1
-0.2
-0.5
-0.1
stress
RCH2 defined with Zinc 0.016 mM
-0.7
-0.3
-0.1
-0.2
+0.0
carbon source
Carbon source Sucrose 10 mM
-0.1
-0.6
-0.1
-0.5
+0.0
stress
Cobalt chloride 0.4 mM
-1.5
+0.2
-0.0
+0.2
+0.1
motility
outer cut, LB soft agar motility assay
-0.6
-0.3
+0.3
+0.1
-0.2
stress
thiosulfate 0.25 M
-0.3
-0.6
+0.2
+0.2
-0.1
carbon source
Ying_Nucleobase14 rep B; time point 2
-0.8
+0.1
+0.1
-0.2
+0.2
vitamin
No vitamins t2
-0.8
+0.6
-0.0
-0.4
-0.1
carbon source
Ying_Nucleobase14 rep C; time point 2
-1.1
+0.2
+0.1
+0.0
+0.1
motility
inner cut, LB soft agar motility assay
-0.1
-0.8
-0.1
+0.3
-0.0
stress
Fluorophosphate 0.125 M
-0.5
-0.4
+0.1
+0.3
+0.0
carbon source
Ying_Others16 rep A; time point 2
-0.9
+0.3
+0.1
-0.0
+0.0
carbon source
D-Glucosamine Hydrochloride (C)
+0.4
-0.2
-0.3
-0.4
+0.1
stress
Chloride 600 mM
-0.3
-0.4
-0.1
+0.4
+0.1
stress
Hydroxylamine 0.5 M
-0.0
+0.5
-0.6
-0.1
+0.0
nitrogen source
L-Lysine (N)
+0.5
-0.4
-0.2
-0.3
+0.1
carbon source
propionate (C)
-0.5
+0.5
-0.0
-0.3
+0.1
carbon source
L-Leucine (C)
+0.7
-0.3
-0.3
-0.2
-0.0
nitrogen source
L-Phenylalanine (N)
+0.7
-0.4
-0.0
-0.1
+0.1
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
-0.5
+0.0
+0.4
+0.5
+0.0
nitrogen source
Parabanic Acid (N)
+0.8
-0.5
+0.1
+0.1
-0.0
carbon source
D-Trehalose (C)
+0.7
-0.3
+0.1
-0.0
+0.2
carbon source
D-Trehalose (C)
+0.7
-0.2
+0.1
-0.2
+0.3
lb
LB no stress 48 hours
+0.5
+0.1
+0.4
+0.1
-0.1
nitrogen source
L-Serine (N)
-0.0
+0.6
+0.1
+0.5
-0.1
nitrogen source
L-Serine (N)
+0.7
+0.3
-0.1
+0.1
+0.2
stress
Zinc chloride 0.0000015625 M
+0.6
+0.1
+0.6
-0.0
+0.0
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+0.6
+0.2
+0.2
+0.3
+0.1
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Pf6N2E2_1569
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Pf6N2E2_1571
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