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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_145 and Pf6N2E2_146 are separated by 235 nucleotides
Pf6N2E2_146 and Pf6N2E2_147 are separated by 4 nucleotides
Pf6N2E2_147 and Pf6N2E2_148 are separated by 15 nucleotides
Pf6N2E2_148 and Pf6N2E2_149 are separated by 274 nucleotides
Pf6N2E2_145 - putative exported protein, at 197,183 to 200,836
_145
Pf6N2E2_146 - Transcriptional regulator, MarR family, at 201,072 to 201,554
_146
Pf6N2E2_147 - Outer membrane component of tripartite multidrug resistance system, at 201,559 to 203,013
_147
Pf6N2E2_148 - Membrane fusion component of tripartite multidrug resistance system, at 203,029 to 204,225
_148
Pf6N2E2_149 - Inner membrane component of tripartite multidrug resistance system, at 204,500 to 206,029
_149
Group
Condition
Pf6N2E2
_145
Pf6N2E2
_146
Pf6N2E2
_147
Pf6N2E2
_148
Pf6N2E2
_149
nitrogen source
L-Phenylalanine (N)
+0.0
-3.8
-0.7
-1.2
-1.1
nitrogen source
Cytosine (N)
-0.0
-3.9
-0.6
-1.0
-0.7
nitrogen source
Gly-Glu (N)
-0.2
-0.3
-1.3
-2.1
-1.8
nitrogen source
L-Phenylalanine (N)
+0.3
-2.3
-0.7
-1.5
-1.3
nitrogen source
Cytidine (N)
+0.5
-1.9
-0.9
-1.4
-1.4
stress
Aluminum chloride 4 mM
-1.3
-2.9
-0.0
-0.0
+0.1
nitrogen source
Putrescine (N)
+0.2
-0.3
-0.9
-1.5
-1.7
stress
Calcium chloride 0.0125 M
-3.2
-0.3
+0.1
-0.2
-0.1
nitrogen source
Cytosine (N)
+0.2
-1.4
-0.6
-0.8
-1.0
nitrogen source
Cytidine (N)
+0.5
-0.5
-0.9
-1.4
-1.3
stress
phosphite 0.25 M
-3.6
+0.2
+0.0
-0.2
+0.1
stress
copper (II) chloride 3 mM
-2.5
+0.9
-0.5
-0.5
-1.0
stress
Hydroxide 0.05 M
-3.2
+0.2
-0.0
+0.0
-0.2
stress
Calcium chloride 0.0125 M
-3.1
+0.3
+0.0
-0.0
-0.3
stress
phosphite 0.25 M
-3.1
+0.3
+0.1
-0.2
-0.1
stress
Bile salts 0.0125 M
-2.2
+0.1
+0.2
-0.5
-0.5
stress
Gjerstad humics 0.5 M
-2.6
+0.3
-0.0
-0.3
-0.3
stress
pyrophosphate 0.0025 M
-2.5
+0.3
-0.1
-0.1
-0.3
stress
sodium iodate 0.005 M
-2.4
+0.4
-0.2
+0.1
-0.5
stress
Gjerstad humics 0.5 M
-2.1
+0.3
-0.2
-0.2
-0.3
stress
Hydroxylamine 0.5 M
-1.0
-1.7
+0.1
+0.8
-0.3
nitrogen source
L-Isoleucine (N)
+0.4
+2.1
-1.3
-1.5
-1.7
nitrogen source
L-Isoleucine (N)
-0.0
+2.2
-1.0
-1.5
-1.3
stress
selenate 0.5 M
-2.1
+0.7
+0.1
-0.0
-0.2
stress
Chloride 600 mM
-2.5
+1.1
-0.0
+0.2
-0.2
nitrogen source
L-Proline (N)
+1.5
-0.4
-0.5
-0.6
-0.8
stress
periodate 0.00125 M
+0.4
+2.0
+0.1
-1.0
-0.9
stress
perchlorate 50 mM
+2.4
-1.3
-0.2
+0.2
-0.1
carbon source
Ying_AminoAcid20 rep A; time point 2
+0.6
-0.9
+0.3
+0.5
+0.9
carbon source
octanoate (C)
+1.3
+0.7
-0.5
+0.5
+0.6
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