Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_1453 and Pf6N2E2_1454 are separated by 155 nucleotidesPf6N2E2_1454 and Pf6N2E2_1455 are separated by 147 nucleotidesPf6N2E2_1455 and Pf6N2E2_1456 are separated by 185 nucleotidesPf6N2E2_1456 and Pf6N2E2_1457 are separated by 0 nucleotides Pf6N2E2_1453 - Xylose activator XylR (AraC family), at 1,700,452 to 1,701,639 _1453 Pf6N2E2_1454 - Xylose isomerase (EC 5.3.1.5), at 1,701,795 to 1,703,111 _1454 Pf6N2E2_1455 - Xylose ABC transporter, periplasmic xylose-binding protein XylF, at 1,703,259 to 1,704,260 _1455 Pf6N2E2_1456 - D-xylose transport ATP-binding protein XylG, at 1,704,446 to 1,706,002 _1456 Pf6N2E2_1457 - Xylose ABC transporter, permease protein XylH, at 1,706,003 to 1,707,139 _1457
Group Condition Pf6N2E2_1453 Pf6N2E2_1454 Pf6N2E2_1455 Pf6N2E2_1456 Pf6N2E2_1457
carbon source D-Xylose (C) -1.2 -0.8 -0.8 -0.9 -0.6
carbon source D-Xylose (C) -1.1 -0.8 -0.6 -0.8 -0.8
stress deoxycholate 0.0125 M +0.3 -0.2 -0.5 -0.6 -1.5
stress Bile salts 0.0125 M -0.7 -0.0 +0.4 -1.3 -0.6
lb LB no stress 48 hours -0.8 +0.2 -0.0 -0.8 -0.2
carbon source D-Glucosamine Hydrochloride (C) -0.7 -0.2 -0.0 -0.4 -0.2
stress Chloride 0.5 M -0.4 +0.1 +0.1 -0.7 -0.5
stress molybdate 0.25 M -0.7 +0.0 +0.1 -0.1 -0.7
nitrogen source nitrogen source nitrite 0.5mM -0.2 -0.2 -0.6 +0.3 -0.6
stress Fluorophosphate 0.125 M -0.9 -0.1 +0.4 -0.5 -0.2
carbon source Ying_OrganicAcid7 rep B; time point 3 -0.3 -0.1 -0.6 -0.5 +0.2
carbon source D-Galactose (C) -0.6 +0.0 +0.3 -0.5 -0.2
motility outer cut, LB soft agar motility assay -0.4 -0.2 -0.0 -0.6 +0.4
nitrogen source nitrogen source nitrate 5mM +0.1 -0.6 -0.2 +0.5 -0.6
stress Nickel (II) chloride 0.0025 M -0.2 +0.2 +0.8 -1.0 -0.4
stress Cobalt chloride 0.4 mM -0.9 -0.2 +0.3 +0.4 -0.1
carbon source Ying_Others16 rep B; time point 2 +0.1 -0.1 +0.3 -0.9 +0.1
stress Aluminum chloride 4 mM -0.5 +0.3 -0.2 -0.3 +0.3
carbon source Carbon source Sucrose 10 mM +0.1 -0.6 -0.2 +0.6 -0.2
nitrogen source nitrogen source Ammonium chloride 20mM +0.2 +0.1 +0.5 -0.7 -0.1
stress Aluminum chloride 0.00005 M -0.5 +0.3 +0.2 +0.3 -0.4
lb LB no stress 48 hours -0.2 -0.0 +0.8 -0.4 -0.1
motility inner cut, LB soft agar motility assay -0.3 +0.3 -0.1 -0.3 +0.5
stress phosphite 0.25 M -0.0 -0.2 +0.8 -0.3 -0.3
nitrogen source Glycine (N) -0.1 +0.6 +0.4 -0.7 -0.1
lb LB no stress 48 hours -0.3 -0.0 +0.6 -0.4 +0.3
stress Zinc chloride 0.0000015625 M +0.2 +0.5 -0.4 -0.6 +0.5
carbon source L-Leucine (C) +0.6 -0.1 +0.5 -0.0 -0.4
nitrogen source Gly-Glu (N) +0.4 +0.4 +0.2 -0.4 +0.1
nitrogen source L-Serine (N) +0.7 +0.1 +0.1 +0.2 +0.4
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