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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_1431 and Pf6N2E2_1432 are separated by 11 nucleotides
Pf6N2E2_1432 and Pf6N2E2_1433 are separated by 67 nucleotides
Pf6N2E2_1433 and Pf6N2E2_1434 are separated by 13 nucleotides
Pf6N2E2_1434 and Pf6N2E2_1435 are separated by 14 nucleotides
Pf6N2E2_1431 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 1,680,698 to 1,681,765
_1431
Pf6N2E2_1432 - High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1), at 1,681,777 to 1,682,658
_1432
Pf6N2E2_1433 - Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1), at 1,682,726 to 1,683,508
_1433
Pf6N2E2_1434 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,683,522 to 1,684,682
_1434
Pf6N2E2_1435 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase, at 1,684,697 to 1,685,794
_1435
Group
Condition
Pf6N2E2
_1431
Pf6N2E2
_1432
Pf6N2E2
_1433
Pf6N2E2
_1434
Pf6N2E2
_1435
nitrogen source
nitrogen source nitrite 0.5mM
-0.7
+0.1
-1.7
-2.9
-0.4
stress
Hydroxylamine 0.5 M
-4.1
+0.1
+0.5
+0.7
-2.3
vitamin
With vitamins t1
-0.1
-0.6
-0.5
-1.8
-0.3
carbon source
Ying_sugar7 rep B; time point 2
+0.2
-0.7
-0.9
-0.2
-1.6
carbon source
RCH2_defined
-0.0
+0.4
-0.7
-1.3
-1.4
motility
inner cut, LB soft agar motility assay
-2.0
+0.4
-1.2
-0.3
+0.3
stress
Bile salts 0.0125 M
-0.6
+0.7
-0.2
-2.4
+0.1
stress
thiosulfate 0.25 M
-0.7
-0.0
-0.2
-1.6
+0.3
stress
Manganese (II) chloride tetrahydrate 0.00078125 M
+0.4
-0.5
-0.9
-0.5
-0.7
carbon source
Ying_OrganicAcid7 rep B; time point 3
+0.4
-0.8
-0.2
-0.3
-1.3
carbon source
Ying_Nucleobase14 rep A; time point 3
-0.8
-0.4
-0.1
+0.5
-1.3
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
+0.0
+0.5
-0.6
-0.3
-1.7
stress
Nickel (II) chloride 0.0025 M
-0.3
-0.9
+0.7
-0.7
-0.7
vitamin
No vitamins t1
+0.5
-0.6
-0.2
-0.6
-1.1
stress
sodium iodate 0.005 M
-0.8
+0.1
+0.4
+0.0
-1.6
carbon source
Ying_all64 rep C; time point 3
+0.5
+0.2
-0.4
-0.7
-1.4
motility
outer cut, LB soft agar motility assay
+0.6
-0.8
-0.6
+0.1
-1.0
carbon source
Ying_AminoAcid20 rep B; time point 2
-0.9
+0.3
+0.6
+0.5
-2.0
carbon source
Carbon source D,L-Lactate 10 mM
+0.5
-0.1
-1.8
+0.2
-0.4
stress
selenate 0.5 M
-1.1
-0.1
-0.8
+0.9
-0.6
nitrogen source
nitrogen source nitrate 5mM
+0.7
-0.5
-0.5
-1.3
+0.3
stress
4-Hydroxyacetophenone 0.00025 M
-0.3
+0.0
+0.4
-1.9
+0.5
stress
Zinc chloride 0.0000015625 M
-1.4
+0.3
+0.6
-0.2
-0.4
motility
outer cut, LB soft agar motility assay
-0.4
-0.2
+0.5
+0.4
-1.4
nitrogen source
nitrogen source nitrite 0.5mM
+0.9
-0.4
+0.3
-1.5
-0.4
stress
deoxycholate 0.0125 M
+0.1
-0.4
+1.1
-1.4
-0.5
lb
LB no stress 48 hours
-1.3
-0.1
+0.9
+0.2
+0.4
stress
bromate 0.05 M
-1.4
+0.6
+0.5
+0.8
-0.1
nitrogen source
L-Serine (N)
-1.1
-0.1
+0.2
+0.5
+1.1
nitrogen source
Glucuronamide (N)
-0.5
+0.4
+1.1
+0.8
+0.9
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