Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_1417 and Pf6N2E2_1418 are separated by 174 nucleotidesPf6N2E2_1418 and Pf6N2E2_1419 are separated by 174 nucleotidesPf6N2E2_1419 and Pf6N2E2_1420 are separated by 2 nucleotidesPf6N2E2_1420 and Pf6N2E2_1421 overlap by 8 nucleotides Pf6N2E2_1417 - Type I secretion outer membrane protein, TolC precursor, at 1,665,094 to 1,665,249 _1417 Pf6N2E2_1418 - Type I secretion outer membrane protein, TolC precursor, at 1,665,424 to 1,665,579 _1418 Pf6N2E2_1419 - Type I secretion outer membrane protein, TolC precursor, at 1,665,754 to 1,667,103 _1419 Pf6N2E2_1420 - ABC exporter for hemopore HasA, membrane fusion protein (MFP) family component HasE, at 1,667,106 to 1,668,476 _1420 Pf6N2E2_1421 - ABC-type protease exporter, ATP-binding component PrtD/AprD, at 1,668,469 to 1,670,190 _1421
Group Condition Pf6N2E2_1417 Pf6N2E2_1418 Pf6N2E2_1419 Pf6N2E2_1420 Pf6N2E2_1421
nitrogen source L-Serine (N) N.D. N.D. -0.1 -1.2 -0.1
stress deoxycholate 0.0125 M N.D. N.D. -0.2 -0.0 -0.9
stress Cobalt chloride 0.6 mM N.D. N.D. -0.0 -0.9 -0.2
stress Cobalt chloride 0.6 mM N.D. N.D. -0.1 -0.8 -0.1
carbon source Ying_Nucleobase14 rep C; time point 3 N.D. N.D. -0.2 -0.8 -0.0
stress Cobalt chloride 0.6 mM N.D. N.D. -0.1 -0.7 -0.3
nitrogen source L-Isoleucine (N) N.D. N.D. -0.4 -0.5 -0.2
carbon source Ying_OrganicAcid7 rep C; time point 3 N.D. N.D. -0.1 -0.9 +0.0
stress bismuth(III) chloride 0.000025 M N.D. N.D. -0.3 -0.4 -0.3
carbon source Ying_AminoAcid20 rep A; time point 3 N.D. N.D. -0.1 -0.8 +0.1
carbon source Ying_AminoAcid20 rep C; time point 3 N.D. N.D. -0.1 -0.8 +0.1
stress sodium iodate 0.005 M N.D. N.D. -0.1 -0.8 +0.1
nitrogen source L-Aspartic Acid (N) N.D. N.D. +0.2 -0.6 -0.2
stress sodium iodate 0.005 M N.D. N.D. +0.2 -0.5 -0.3
stress DEANONOate 0.000625 M N.D. N.D. +0.3 -0.6 -0.2
nitrogen source L-Glutamic (N) N.D. N.D. -0.6 +0.3 -0.1
vitamin With vitamins t1 N.D. N.D. -0.4 +0.4 -0.3
stress Bile salts 0.0125 M N.D. N.D. -0.6 +0.5 -0.1
stress RCH2 defined with Cobalt chloride 0.04 mM N.D. N.D. -0.4 +0.5 -0.3
nitrogen source L-Lysine (N) N.D. N.D. +0.5 -0.4 -0.2
stress RCH2 defined with copper (II) chloride 0.03 mM N.D. N.D. +0.3 +0.3 -0.6
stress phosphite 0.25 M N.D. N.D. +0.3 -0.4 +0.2
stress Chlorite 0.00005 M N.D. N.D. +0.2 -0.5 +0.3
carbon source D-Fructose (C) N.D. N.D. +0.8 -0.5 +0.3
carbon source D-Galactose (C) N.D. N.D. +0.7 -0.3 +0.4
carbon source D-Glucosamine Hydrochloride (C) N.D. N.D. +0.6 -0.2 +0.5
carbon source Ying_sugar7 rep B; time point 2 N.D. N.D. +0.2 +0.7 +0.1
carbon source Ying_Others16 rep C; time point 2 N.D. N.D. -0.1 +0.7 +0.4
carbon source D-Galactose (C) N.D. N.D. +0.8 +0.0 +0.2
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A N.D. N.D. +0.4 +0.5 +0.2
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