Fitness for 5 genes in Pseudomonas fluorescens FW300-N2E2

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500 ntPf6N2E2_1305 and Pf6N2E2_1306 are separated by 83 nucleotidesPf6N2E2_1306 and Pf6N2E2_1307 are separated by 186 nucleotidesPf6N2E2_1307 and Pf6N2E2_1308 overlap by 4 nucleotidesPf6N2E2_1308 and Pf6N2E2_1309 are separated by 5 nucleotides Pf6N2E2_1305 - Homoprotocatechuate degradative operon repressor, at 1,539,894 to 1,540,295 _1305 Pf6N2E2_1306 - Transcriptional activator of 4-hydroxyphenylacetate 3-monooxygenase operon, XylS/AraC family, at 1,540,379 to 1,541,284 _1306 Pf6N2E2_1307 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 1,541,471 to 1,542,148 _1307 Pf6N2E2_1308 - 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-), at 1,542,145 to 1,542,915 _1308 Pf6N2E2_1309 - 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60), at 1,542,921 to 1,544,381 _1309
Group Condition Pf6N2E2_1305 Pf6N2E2_1306 Pf6N2E2_1307 Pf6N2E2_1308 Pf6N2E2_1309
stress deoxycholate 0.0125 M -3.2 -0.2 -0.8 -0.7 -0.1
stress sodium iodate 0.005 M -0.8 -0.5 -0.7 -0.8 -0.2
stress Nickel (II) chloride 1.5 mM -1.8 -0.0 -0.0 -0.4 -0.6
stress sodium iodide 0.125 M -1.0 -0.4 -0.2 -0.6 -0.3
stress phosphite 0.25 M -1.1 -0.5 -0.4 -0.0 -0.3
stress dimethyl sulfone 0.25 M -0.5 -0.5 +0.1 -1.0 -0.5
motility outer cut, LB soft agar motility assay -0.7 -0.3 +0.4 -1.2 -0.5
nitrogen source Gly-Glu (N) -1.1 +0.1 -0.9 -0.4 +0.1
lb LB no stress 48 hours -1.6 -0.4 -0.4 +0.2 -0.0
stress pyrophosphate 0.0025 M -0.8 -0.5 -0.2 -0.4 -0.4
nitrogen source nitrogen source nitrite 0.5mM -1.1 +0.2 -0.4 -0.4 -0.3
stress DEANONOate 0.000625 M -1.0 -0.4 -0.4 -0.5 +0.2
stress Manganese (II) chloride tetrahydrate 0.00078125 M -1.6 +0.1 +0.1 -0.7 +0.4
carbon source Carbon source Sucrose 10 mM -0.5 -0.5 +0.4 -0.2 -0.8
stress Hans 100x vitamins -1.1 -0.4 +0.2 -0.5 +0.2
stress Cobalt chloride 0.4 mM -1.2 -0.2 +0.2 +0.3 -0.4
stress Nickel (II) chloride 0.0025 M -0.7 +0.0 -0.3 +0.5 -0.6
nitrogen source nitrogen source nitrite 5mM -0.2 +0.4 -0.4 -1.1 +0.3
stress thiosulfate 0.25 M -0.6 -0.3 -0.6 +0.6 -0.1
stress bromate 0.05 M -0.1 -0.8 +0.2 -0.6 +0.4
nitrogen source Gly-Glu (N) -1.2 +0.2 +0.1 +0.4 -0.3
motility inner cut, LB soft agar motility assay +0.3 -0.1 -0.4 +0.7 -0.9
vitamin No vitamins t1 +0.9 -0.4 +0.3 -0.5 -0.3
stress Zinc chloride 0.0000015625 M -0.9 -0.3 +0.4 -0.1 +1.0
vitamin No vitamins t2 +0.8 -0.2 +0.4 -0.6 -0.1
carbon source D-Galactose (C) +1.8 -0.6 +0.1 -0.3 -0.3
carbon source D-Glucosamine Hydrochloride (C) +1.7 +0.1 -0.3 -0.1 -0.7
stress Hydroxylamine 0.5 M +0.7 +0.3 +0.7 -0.4 -0.4
carbon source D-Galactose (C) +2.3 -0.3 +0.1 -0.1 -0.5
carbon source D-Fructose (C) +2.9 +0.2 -0.7 +0.0 -0.0
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