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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_125 and Pf6N2E2_126 are separated by 376 nucleotides
Pf6N2E2_126 and Pf6N2E2_127 are separated by 699 nucleotides
Pf6N2E2_127 and Pf6N2E2_128 overlap by 1 nucleotides
Pf6N2E2_128 and Pf6N2E2_129 overlap by 11 nucleotides
Pf6N2E2_125 - UDP-glucose dehydrogenase (EC 1.1.1.22), at 172,307 to 173,671
_125
Pf6N2E2_126 - FIG00960892: hypothetical protein, at 174,048 to 175,745
_126
Pf6N2E2_127 - AttE component of AttEFGH ABC transport system, at 176,445 to 177,113
_127
Pf6N2E2_128 - AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system, at 177,113 to 179,581
_128
Pf6N2E2_129 - AttH component of AttEFGH ABC transport system, at 179,571 to 180,644
_129
Group
Condition
Pf6N2E2
_125
Pf6N2E2
_126
Pf6N2E2
_127
Pf6N2E2
_128
Pf6N2E2
_129
carbon source
a-Ketoglutaric (C)
+0.1
-0.1
-3.9
-0.4
-0.0
nitrogen source
nitrogen source nitrite 0.5mM
-0.0
-0.1
-3.4
+0.0
-0.2
stress
bromate 0.05 M
-0.3
-0.0
-2.9
-0.3
-0.1
lb
LB no stress 48 hours
-0.3
+0.1
-2.5
+0.2
-0.0
stress
perchlorate 0.125 M
-0.3
-0.1
-1.9
+0.1
-0.1
stress
Hydrochloric Acid 0.005 M
-0.7
+0.0
-1.0
-0.3
-0.2
nitrogen source
L-Serine (N)
-0.2
+0.1
-1.9
-0.0
-0.1
nitrogen source
L-Aspartic Acid (N)
-0.4
-0.1
-1.3
-0.3
-0.0
nitrogen source
Glucuronamide (N)
+0.4
+0.1
-2.6
+0.0
+0.1
stress
Cobalt chloride 0.6 mM
-0.4
-0.1
-1.2
-0.1
-0.2
nitrogen source
nitrogen source nitrate 20mM
-0.1
-0.3
-1.0
-0.4
-0.1
carbon source
D-Fructose (C)
-0.4
+0.1
-1.8
-0.0
+0.2
stress
selenite 0.0025 M
-0.4
+0.1
-1.1
-0.2
-0.2
nitrogen source
L-Citrulline (N)
-0.3
+0.1
-1.7
+0.2
+0.2
stress
Fluorophosphate 0.125 M
-0.2
+0.1
-1.0
-0.4
+0.2
carbon source
propionate (C)
-0.2
-0.1
-1.3
+0.3
-0.1
lb
LB no stress 48 hours
-0.4
+0.2
-1.5
+0.2
+0.3
nitrogen source
nitrogen source nitrate 5mM
+0.2
-0.1
-1.0
-0.5
+0.2
motility
inner cut, LB soft agar motility assay
+0.2
-0.2
-1.5
+0.2
+0.2
stress
phosphite 0.25 M
-0.2
-0.1
+0.6
-1.0
-0.1
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.2
-0.0
+0.9
-1.1
-0.3
stress
Chlorite 0.00005 M
-0.1
-0.1
+0.9
-0.5
-0.3
stress
Magnesium chloride 0.125 M
+0.5
+0.1
-0.8
+0.3
-0.2
stress
Hydroxide 0.05 M
-0.5
-0.0
+0.9
-0.6
+0.2
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
-0.5
+0.0
+1.1
-0.6
+0.2
stress
Aluminum chloride 4 mM
-0.4
+0.1
+1.1
-0.3
+0.1
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.6
-0.0
+1.6
-0.4
+0.1
motility
outer cut, LB soft agar motility assay
+0.4
+0.1
+0.7
-0.5
+0.3
carbon source
D-Trehalose (C)
-0.2
+0.0
+1.3
-0.4
+0.3
stress
Chloride 0.5 M
+0.2
+0.1
+1.4
-0.0
-0.2
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