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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_1244 and Pf6N2E2_1245 are separated by 121 nucleotides
Pf6N2E2_1245 and Pf6N2E2_1246 are separated by 25 nucleotides
Pf6N2E2_1246 and Pf6N2E2_1247 are separated by 88 nucleotides
Pf6N2E2_1247 and Pf6N2E2_1248 are separated by 285 nucleotides
Pf6N2E2_1244 - hypothetical protein, at 1,458,144 to 1,458,374
_1244
Pf6N2E2_1245 - hypothetical protein, at 1,458,496 to 1,458,921
_1245
Pf6N2E2_1246 - FIG00961372: hypothetical protein, at 1,458,947 to 1,459,174
_1246
Pf6N2E2_1247 - hypothetical protein, at 1,459,263 to 1,459,448
_1247
Pf6N2E2_1248 - MutT/nudix family protein, at 1,459,734 to 1,460,096
_1248
Group
Condition
Pf6N2E2
_1244
Pf6N2E2
_1245
Pf6N2E2
_1246
Pf6N2E2
_1247
Pf6N2E2
_1248
stress
RCH2 defined with copper (II) chloride 0.03 mM
N.D.
-0.5
-0.4
-0.7
-1.2
carbon source
Ying_OrganicAcid7 rep A; time point 3
N.D.
-0.5
-0.4
-0.1
-1.4
carbon source
Ying_Nucleobase14 rep C; time point 3
N.D.
-0.6
-0.3
-0.2
-1.3
carbon source
Ying_Nucleobase14 rep A; time point 3
N.D.
-0.4
-0.3
-0.2
-1.3
stress
Fluorophosphate 0.125 M
N.D.
-0.0
-0.7
-0.5
-1.0
carbon source
Ying_Nucleobase14 rep B; time point 3
N.D.
-0.5
-0.3
-0.1
-1.3
carbon source
Ying_OrganicAcid7 rep C; time point 2
N.D.
-0.4
-1.6
-0.1
-0.1
stress
phosphite 0.25 M
N.D.
-0.4
-0.0
-0.1
-1.7
nitrogen source
nitrogen source nitrite 5mM
N.D.
-0.2
-2.2
-0.0
+0.2
carbon source
Ying_all64 rep B; time point 3
N.D.
-0.4
-0.4
+0.1
-1.3
nitrogen source
nitrogen source nitrate 5mM
N.D.
+0.1
-1.0
-0.3
-0.8
stress
Chloride 0.5 M
N.D.
-0.6
+0.3
-0.3
-1.3
lb
LB no stress 48 hours
N.D.
-0.3
+0.4
-1.2
-0.7
carbon source
RCH2_defined
N.D.
-0.4
-0.1
-1.5
+0.4
stress
Zinc chloride 0.0000015625 M
N.D.
-0.4
+0.1
-1.5
+0.3
carbon source
Ying_OrganicAcid7 rep B; time point 3
N.D.
-0.5
+0.3
-0.0
-1.4
stress
sodium fluoride 12.5 mM
N.D.
+0.1
-1.5
-0.3
+0.2
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
N.D.
-0.2
+0.6
-0.3
-1.6
carbon source
octanoate (C)
N.D.
-0.1
-0.8
-1.1
+0.6
stress
periodate 0.00125 M
N.D.
+0.1
+0.2
+0.4
-2.0
stress
RCH2 defined with Cobalt chloride 0.04 mM
N.D.
-0.0
+1.0
-0.5
-1.6
stress
Chromium(III) Chloride Hexahydrate 0.000390625 M
N.D.
+0.0
+0.8
-0.4
-1.3
stress
Chlorite 0.00005 M
N.D.
-0.1
-1.2
+0.3
+0.6
vitamin
With vitamins t1
N.D.
-0.4
+1.9
-0.1
-1.3
vitamin
With vitamins t2
N.D.
-0.3
+1.0
+0.7
-1.0
carbon source
Ying_sugar7 rep B; time point 2
N.D.
+0.6
-0.7
-0.1
+0.7
vitamin
No vitamins t2
N.D.
-0.2
+1.7
-0.1
-1.0
stress
deoxycholate 0.0125 M
N.D.
-0.4
+1.2
-0.4
+0.1
carbon source
L-Leucine (C)
N.D.
+0.3
-1.0
+0.1
+1.5
vitamin
No vitamins t1
N.D.
-0.4
+2.4
+0.5
-1.3
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