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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_1240 and Pf6N2E2_1241 are separated by 265 nucleotides
Pf6N2E2_1241 and Pf6N2E2_1242 are separated by 442 nucleotides
Pf6N2E2_1242 and Pf6N2E2_1243 are separated by 164 nucleotides
Pf6N2E2_1243 and Pf6N2E2_1244 are separated by 152 nucleotides
Pf6N2E2_1240 - Membrane protease family protein y2843, at 1,453,248 to 1,454,102
_1240
Pf6N2E2_1241 - sensor histidine kinase, at 1,454,368 to 1,456,164
_1241
Pf6N2E2_1242 - Uricase (urate oxidase) (EC 1.7.3.3), at 1,456,607 to 1,457,572
_1242
Pf6N2E2_1243 - FIG00953437: hypothetical protein, at 1,457,737 to 1,457,991
_1243
Pf6N2E2_1244 - hypothetical protein, at 1,458,144 to 1,458,374
_1244
Group
Condition
Pf6N2E2
_1240
Pf6N2E2
_1241
Pf6N2E2
_1242
Pf6N2E2
_1243
Pf6N2E2
_1244
stress
dimethyl sulfone 0.25 M
-0.3
-0.1
+0.0
-1.7
N.D.
stress
Chloride 0.5 M
-0.2
-0.4
-0.2
-1.1
N.D.
stress
dimethyl sulfone 0.25 M
+0.1
-0.3
-0.3
-1.0
N.D.
stress
Bile salts 0.0125 M
-1.4
-0.1
-0.3
+0.3
N.D.
carbon source
octanoate (C)
-0.4
-0.9
-0.2
+0.0
N.D.
nitrogen source
nitrogen source nitrite 0.5mM
-0.1
+0.1
-0.8
-0.5
N.D.
motility
outer cut, LB soft agar motility assay
+0.1
-0.5
+0.1
-0.9
N.D.
stress
molybdate 0.25 M
+0.1
-0.1
-0.2
-1.1
N.D.
stress
Chloride 0.5 M
-0.1
-0.4
-0.3
-0.5
N.D.
stress
deoxycholate 0.0125 M
+0.2
+0.0
-1.7
+0.4
N.D.
carbon source
octanoate (C)
-1.1
-0.2
+0.1
+0.1
N.D.
stress
thiosulfate 0.25 M
+0.1
-0.3
+0.0
-0.7
N.D.
stress
Vanillyl Alcohol 0.005 M
-0.4
-0.3
+0.2
-0.3
N.D.
stress
sodium iodate 0.005 M
-0.4
-0.3
-0.3
+0.2
N.D.
stress
molybdate 0.25 M
+0.2
-0.2
+0.3
-1.0
N.D.
stress
Nalidixic 0.004 mg/ml
-0.6
+0.1
-0.3
+0.3
N.D.
vitamin
With vitamins t1
-0.5
-0.0
+0.4
-0.4
N.D.
nitrogen source
nitrogen source nitrite 1mM
+0.5
+0.3
-0.8
-0.4
N.D.
carbon source
RCH2_defined
-0.6
+0.1
-0.2
+0.4
N.D.
vitamin
No vitamins t2
-0.6
-0.1
+0.5
-0.0
N.D.
vitamin
No vitamins t1
-0.5
-0.0
+0.5
-0.2
N.D.
nitrogen source
L-Serine (N)
+0.4
+0.2
-0.4
-0.4
N.D.
stress
Magnesium chloride 0.125 M
+0.3
-0.4
-0.3
+0.4
N.D.
nitrogen source
Glycine (N)
+0.5
+0.1
-0.3
-0.2
N.D.
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
-0.6
+0.0
+0.4
+0.3
N.D.
stress
Hydroxylamine 0.5 M
+0.4
-0.1
+0.5
-0.4
N.D.
carbon source
L-Leucine (C)
+0.7
+0.4
-0.5
-0.0
N.D.
carbon source
Ying_sugar7 rep B; time point 2
+0.4
+0.3
+0.6
-0.5
N.D.
stress
Zinc chloride 0.0000015625 M
+0.4
-0.1
+0.1
+0.5
N.D.
stress
DEANONOate 0.000625 M
+0.8
-0.1
+0.1
+0.2
N.D.
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