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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_1219 and Pf6N2E2_1220 are separated by 63 nucleotides
Pf6N2E2_1220 and Pf6N2E2_1221 are separated by 319 nucleotides
Pf6N2E2_1221 and Pf6N2E2_1222 are separated by 148 nucleotides
Pf6N2E2_1222 and Pf6N2E2_1223 are separated by 153 nucleotides
Pf6N2E2_1219 - FIG00955186: hypothetical protein, at 1,425,925 to 1,427,115
_1219
Pf6N2E2_1220 - hypothetical protein, at 1,427,179 to 1,427,340
_1220
Pf6N2E2_1221 - sodium/hydrogen exchanger family protein, at 1,427,660 to 1,428,997
_1221
Pf6N2E2_1222 - FIG00954310: hypothetical protein, at 1,429,146 to 1,429,682
_1222
Pf6N2E2_1223 - Amino acid transporters, at 1,429,836 to 1,430,066
_1223
Group
Condition
Pf6N2E2
_1219
Pf6N2E2
_1220
Pf6N2E2
_1221
Pf6N2E2
_1222
Pf6N2E2
_1223
stress
thiosulfate 0.25 M
-0.1
-0.7
-0.0
+0.2
-1.8
carbon source
Ying_sugar7 rep B; time point 2
+0.0
-0.7
-0.2
-0.2
-0.7
stress
RCH2 defined with copper (II) chloride 0.03 mM
-0.3
+0.2
-0.4
-0.4
-0.6
carbon source
Ying_Nucleobase14 rep B; time point 1
+0.1
-1.5
+0.2
-0.1
-0.3
motility
inner cut, LB soft agar motility assay
-0.0
-0.3
-0.5
+0.4
-1.1
nitrogen source
Glucuronamide (N)
+0.2
-0.8
-0.5
+0.3
-0.6
stress
Nickel (II) chloride 0.0025 M
-0.0
-0.8
-0.8
+0.1
+0.0
carbon source
Ying_AminoAcid20 rep A; time point 3
-0.1
-0.3
+0.1
+0.3
-1.0
carbon source
Ying_Nucleobase14 rep C; time point 3
-0.3
+0.4
-0.0
-0.1
-1.0
nitrogen source
L-Arginine (N)
+0.3
+0.1
-0.2
+0.2
-1.4
lb
LB no stress 48 hours
-0.1
-1.4
+0.2
+0.1
+0.1
carbon source
Ying_Nucleobase14 rep A; time point 2
-0.1
-0.7
+0.2
+0.2
-0.6
stress
bromate 0.05 M
-0.8
+0.1
-0.6
+0.1
+0.3
carbon source
RCH2_defined
-0.4
-0.9
+0.2
+0.4
-0.1
nitrogen source
L-Serine (N)
+0.1
-1.5
+0.1
+0.2
+0.4
nitrogen source
nitrogen source nitrate 20mM
-0.2
+0.6
-0.1
-0.4
-0.6
stress
Gjerstad humics 0.5 M
+0.2
+0.2
+0.2
-0.2
-1.2
stress
bromate 0.05 M
+0.1
-0.5
-0.6
+0.6
-0.2
stress
Bile salts 0.0125 M
-0.1
+0.7
-0.5
+0.2
-0.8
carbon source
D-Trehalose (C)
+0.0
-0.5
+0.4
+0.4
-0.8
stress
Fusidic 0.4 mg/ml
+0.1
-0.5
-0.4
-0.1
+0.6
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.2
-0.7
+0.2
-0.1
+0.7
vitamin
No vitamins t1
-0.0
+0.4
+0.5
-0.6
-0.4
stress
deoxycholate 0.0125 M
+0.1
-0.7
-0.2
+0.3
+0.6
carbon source
L-Leucine (C)
+0.1
+0.4
+0.4
+0.2
-0.8
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.5
-0.0
+0.5
-0.3
+0.5
stress
Cadmium chloride hemipentahydrate 0.00005 M
+0.4
+0.8
-0.0
+0.1
-0.6
nitrogen source
L-Serine (N)
-0.1
-0.6
+0.5
+0.1
+0.8
motility
inner cut, LB soft agar motility assay
+0.1
+0.7
+0.5
+0.1
-0.6
stress
Chloride 500 mM
+0.2
+0.5
+0.4
-0.2
+0.5
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