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Gene
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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf6N2E2_1179 and Pf6N2E2_1180 are separated by 33 nucleotides
Pf6N2E2_1180 and Pf6N2E2_1181 are separated by 87 nucleotides
Pf6N2E2_1181 and Pf6N2E2_1182 are separated by 57 nucleotides
Pf6N2E2_1182 and Pf6N2E2_1183 are separated by 152 nucleotides
Pf6N2E2_1179 - hypothetical protein, at 1,381,239 to 1,381,979
_1179
Pf6N2E2_1180 - FOG: HEAT repeat, at 1,382,013 to 1,383,254
_1180
Pf6N2E2_1181 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,383,342 to 1,384,094
_1181
Pf6N2E2_1182 - Transcriptional regulator, LysR family, at 1,384,152 to 1,385,033
_1182
Pf6N2E2_1183 - Major facilitator family transporter, at 1,385,186 to 1,386,394
_1183
Group
Condition
Pf6N2E2
_1179
Pf6N2E2
_1180
Pf6N2E2
_1181
Pf6N2E2
_1182
Pf6N2E2
_1183
carbon source
L-Leucine (C)
-0.3
+0.2
+0.1
-2.0
-0.5
stress
RCH2 defined with Cobalt chloride 0.02 mM
-1.5
-0.3
-0.2
+0.1
-0.2
stress
Zinc chloride 0.0000015625 M
-1.3
+0.2
-0.9
-0.1
+0.2
carbon source
Carbon source D,L-Lactate 10 mM
-0.2
-0.0
-0.4
-1.2
-0.2
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-1.9
+0.1
-0.1
+0.5
-0.5
carbon source
Carbon source Sucrose 5 mM
-0.6
-0.2
+0.3
-1.0
-0.4
vitamin
With vitamins t2
-0.9
-0.3
-0.3
-0.5
+0.1
carbon source
octanoate (C)
-0.9
-0.6
-0.2
-0.1
+0.2
vitamin
With vitamins t1
-1.3
-0.0
+0.1
-0.4
+0.2
vitamin
No vitamins t1
-1.4
-0.3
-0.1
+0.3
+0.0
carbon source
D-Trehalose (C)
+0.3
+0.1
-0.2
-1.4
-0.2
stress
Chloride 600 mM
-0.1
+0.1
+0.3
-0.8
-0.7
stress
Aluminum chloride 4 mM
-1.5
+0.0
+0.3
+0.1
+0.0
stress
Hydroxylamine 0.5 M
-1.0
+0.3
+0.2
-0.6
+0.1
stress
DEANONOate 0.000625 M
-0.3
-0.2
+0.4
-1.1
+0.2
nitrogen source
L-Glutamine (N)
-0.6
+0.2
+0.4
-0.6
-0.2
stress
RCH2 defined with Thallium(I) acetate 0.002 mg/ml
-1.0
-0.2
-0.0
+0.8
-0.1
carbon source
Trisodium citrate (C)
-0.2
+0.4
+0.3
-0.9
-0.2
stress
thiosulfate 0.25 M
+0.6
+0.1
+0.4
-1.7
+0.3
stress
molybdate 0.25 M
-0.7
-0.1
+0.2
+0.8
-0.3
stress
RCH2 defined with copper (II) chloride 0.03 mM
-1.0
-0.1
+0.0
+0.9
+0.1
carbon source
4-Hydroxybenzoic Acid (C)
+0.6
+0.3
+0.4
-1.2
-0.1
carbon source
RCH2_defined
-0.8
-0.4
+0.4
+1.0
-0.2
stress
Cobalt chloride 0.4 mM
-0.9
+0.0
+0.3
+0.3
+0.4
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.9
-0.1
-0.1
+1.1
+0.2
stress
RCH2 defined with Cobalt chloride 0.04 mM
-0.4
-0.2
+0.3
+1.0
-0.4
stress
Bile salts 0.0125 M
+1.1
-0.6
+0.5
-1.2
+0.6
nitrogen source
L-Serine (N)
+0.5
+0.1
+0.9
+0.2
-0.7
nitrogen source
L-Serine (N)
+0.5
+1.1
+0.3
-0.5
-0.2
stress
Cobalt chloride 0.6 mM
+1.1
+0.2
-0.4
+0.8
-0.0
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