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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_106 and Pf6N2E2_107 are separated by 10 nucleotides
Pf6N2E2_107 and Pf6N2E2_108 are separated by 48 nucleotides
Pf6N2E2_108 and Pf6N2E2_109 are separated by 119 nucleotides
Pf6N2E2_109 and Pf6N2E2_110 are separated by 188 nucleotides
Pf6N2E2_106 - Glycerol-3-phosphate ABC transporter, permease protein UgpE (TC 3.A.1.1.3), at 151,621 to 152,421
_106
Pf6N2E2_107 - Probable transmembrane protein, at 152,432 to 152,704
_107
Pf6N2E2_108 - Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3), at 152,753 to 154,495
_108
Pf6N2E2_109 - Hydrolases of the alpha/beta superfamily, at 154,615 to 155,490
_109
Pf6N2E2_110 - Cellobiose phosphotransferase system YdjC-like protein, at 155,679 to 156,461
_110
Group
Condition
Pf6N2E2
_106
Pf6N2E2
_107
Pf6N2E2
_108
Pf6N2E2
_109
Pf6N2E2
_110
motility
inner cut, LB soft agar motility assay
-0.6
N.D.
+0.0
-0.2
-0.6
carbon source
Ying_Others16 rep B; time point 2
-0.6
N.D.
-0.1
-0.1
-0.1
nitrogen source
nitrogen source nitrate 5mM
-0.3
N.D.
-0.1
-0.2
-0.3
nitrogen source
Cytidine (N)
+0.1
N.D.
-0.0
-0.2
-0.6
stress
RCH2 defined with Nickel (II) chloride 0.04 mM
-0.2
N.D.
-0.0
+0.4
-0.5
stress
Nickel (II) chloride 1.5 mM
+0.4
N.D.
-0.1
-0.4
-0.2
stress
Nalidixic 0.004 mg/ml
+0.3
N.D.
-0.1
-0.5
+0.1
nitrogen source
Glucuronamide (N)
+0.3
N.D.
-0.2
-0.2
-0.2
stress
antimonate 0.005 M
-0.1
N.D.
-0.2
+0.4
-0.4
stress
Nickel (II) chloride 1.5 mM
-0.2
N.D.
-0.1
-0.3
+0.4
nitrogen source
Gly-Glu (N)
+0.5
N.D.
+0.1
-0.4
-0.2
nitrogen source
L-Isoleucine (N)
+0.2
N.D.
-0.2
+0.3
-0.3
stress
periodate 0.00125 M
-0.2
N.D.
-0.2
-0.1
+0.5
stress
Magnesium chloride 0.125 M
+0.3
N.D.
-0.2
-0.2
+0.2
carbon source
octanoate (C)
-0.3
N.D.
-0.1
+0.3
+0.2
nitrogen source
nitrogen source nitrite 0.5mM
+0.4
N.D.
-0.2
-0.2
+0.1
stress
Fluorophosphate 0.125 M
+0.1
N.D.
+0.0
-0.5
+0.5
stress
dimethyl sulfone 0.25 M
-0.4
N.D.
+0.2
-0.0
+0.3
stress
sodium carbonate 0.0125 M
-0.4
N.D.
+0.1
+0.2
+0.3
stress
DEANONOate 0.000625 M
+0.2
N.D.
-0.0
+0.4
-0.3
stress
pyrophosphate 0.0025 M
-0.3
N.D.
-0.1
+0.4
+0.2
stress
Bile salts 0.0125 M
-0.5
N.D.
-0.0
-0.0
+0.7
stress
deoxycholate 0.0125 M
-0.3
N.D.
+0.2
-0.1
+0.5
carbon source
L-Leucine (C)
+0.5
N.D.
+0.2
-0.2
+0.1
stress
bromate 0.05 M
+0.1
N.D.
-0.3
+0.3
+0.7
carbon source
succinate (C)
+0.4
N.D.
+0.1
+0.1
+0.2
vitamin
No vitamins t1
+0.1
N.D.
+0.1
+0.3
+0.3
lb
LB no stress 24 hours
+0.2
N.D.
+0.1
+0.2
+0.4
nitrogen source
L-Aspartic Acid (N)
+0.3
N.D.
+0.1
+0.5
+0.3
nitrogen source
nitrogen source nitrite 5mM
+0.5
N.D.
-0.2
+0.5
+0.6
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