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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N2E2
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500 nt
Pf6N2E2_1034 and Pf6N2E2_1035 are separated by 84 nucleotides
Pf6N2E2_1035 and Pf6N2E2_1036 are separated by 1 nucleotides
Pf6N2E2_1036 and Pf6N2E2_1037 are separated by 737 nucleotides
Pf6N2E2_1037 and Pf6N2E2_1038 are separated by 142 nucleotides
Pf6N2E2_1034 - Ferric siderophore transport system, periplasmic binding protein TonB, at 1,208,134 to 1,208,943
_1034
Pf6N2E2_1035 - MotA/TolQ/ExbB proton channel family protein, at 1,209,028 to 1,209,753
_1035
Pf6N2E2_1036 - Biopolymer transport protein ExbD/TolR, at 1,209,755 to 1,210,156
_1036
Pf6N2E2_1037 - hypothetical protein, at 1,210,894 to 1,211,277
_1037
Pf6N2E2_1038 - citrate transporter, at 1,211,420 to 1,212,706
_1038
Group
Condition
Pf6N2E2
_1034
Pf6N2E2
_1035
Pf6N2E2
_1036
Pf6N2E2
_1037
Pf6N2E2
_1038
nitrogen source
nitrogen source nitrate 20mM
-2.3
+0.3
+0.1
-1.5
-0.3
stress
DEANONOate 0.000625 M
-1.4
-0.7
-0.2
-0.4
+0.2
nitrogen source
nitrogen source nitrite 1mM
-2.4
+0.2
-0.3
-0.1
+0.0
stress
selenate 0.5 M
-1.5
-0.3
-0.3
-0.3
+0.1
stress
Hans 100x vitamins
-0.9
-0.6
-0.5
-0.4
+0.1
nitrogen source
nitrogen source nitrate 20mM
-2.1
+0.0
-0.4
+0.6
-0.3
carbon source
RCH2_defined
-1.7
-0.5
+0.3
-0.4
+0.1
stress
antimonate 0.005 M
-1.4
+0.1
-0.2
-0.6
+0.0
carbon source
Ying_sugar7 rep B; time point 2
-0.6
-0.6
-0.9
+0.1
+0.0
carbon source
4-Hydroxybenzoic Acid (C)
-1.8
+0.0
+0.3
-0.6
+0.0
nitrogen source
nitrogen source nitrite 0.5mM
-2.1
-0.0
-0.2
+0.4
-0.1
carbon source
Ying_AminoAcid20 rep B; time point 3
+0.3
-0.2
-0.8
-0.9
-0.3
nitrogen source
nitrogen source nitrate 5mM
-2.3
+0.2
-0.3
+0.6
+0.0
nitrogen source
nitrogen source nitrite 5mM
-0.9
-1.3
-0.2
+0.6
+0.1
stress
thiosulfate 0.25 M
-1.5
+0.0
+0.3
-0.5
+0.2
carbon source
4-Hydroxybenzoic Acid (C)
-1.3
+0.2
+0.1
-0.6
+0.2
stress
RCH2 defined with Cobalt chloride 0.04 mM
-1.9
-0.0
+0.4
+0.1
-0.0
stress
Bile salts 0.0125 M
-1.9
+0.5
+0.1
-0.2
+0.3
stress
Chlorite 0.00005 M
-1.0
-0.6
+0.7
-0.4
+0.2
stress
RCH2 defined with copper (II) chloride 0.03 mM
-1.0
-0.2
+0.7
-0.2
-0.0
nitrogen source
nitrogen source nitrite 1mM
+0.1
-0.9
-0.4
+0.7
-0.1
stress
Zinc chloride 0.0000015625 M
+0.5
-0.3
+0.6
-1.2
-0.1
stress
Cobalt chloride 0.4 mM
-1.1
+0.7
+0.6
-0.6
+0.1
motility
inner cut, LB soft agar motility assay
-0.8
-0.7
+0.9
+0.8
-0.1
stress
phosphite 0.25 M
+1.0
-0.2
-0.9
+0.1
+0.1
stress
Cobalt chloride 0.4 mM
+0.0
+1.1
-0.2
-0.7
+0.1
carbon source
octanoate (C)
+1.1
-0.0
+0.2
-0.8
-0.0
stress
Nickel (II) chloride 1.5 mM
+0.5
+0.6
+0.2
-0.9
+0.2
nitrogen source
Glucuronamide (N)
+0.7
-0.4
+0.2
+0.6
-0.2
carbon source
octanoate (C)
+1.1
+0.2
+0.6
-0.3
-0.4
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