Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_913 and Pf1N1B4_914 are separated by 65 nucleotidesPf1N1B4_914 and Pf1N1B4_915 are separated by 11 nucleotidesPf1N1B4_915 and Pf1N1B4_916 are separated by 10 nucleotidesPf1N1B4_916 and Pf1N1B4_917 are separated by 119 nucleotides Pf1N1B4_913 - FIG00958224: hypothetical protein, at 1,038,664 to 1,039,152 _913 Pf1N1B4_914 - ABC-type polar amino acid transport system, ATPase component, at 1,039,218 to 1,039,982 _914 Pf1N1B4_915 - Glutamate Aspartate transport system permease protein GltK (TC 3.A.1.3.4), at 1,039,994 to 1,041,091 _915 Pf1N1B4_916 - Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4), at 1,041,102 to 1,042,229 _916 Pf1N1B4_917 - Glutamate Aspartate periplasmic binding protein precursor GltI (TC 3.A.1.3.4), at 1,042,349 to 1,043,380 _917
Group Condition Pf1N1B4_913 Pf1N1B4_914 Pf1N1B4_915 Pf1N1B4_916 Pf1N1B4_917
nitrogen source L-Isoleucine (N) -0.1 -0.6 -1.1 -0.8 -1.0
nitrogen source L-Leucine (N) -0.2 -0.8 -0.8 -0.9 -0.7
nitrogen source D-Alanine (N) -0.1 -0.2 -0.8 -1.0 -0.7
carbon source L-Isoleucine (C) +0.0 -0.4 -0.9 -0.9 -0.4
carbon source L-Leucine (C) +0.2 -0.6 -0.5 -0.8 -0.5
carbon source carbon source Sucrose 0.5mM -0.1 -1.5 -0.1 -0.5 +0.2
nitrogen source L-Valine (N) +0.1 -0.1 -0.5 -0.6 -0.2
anaerobic N2E2wt with N1B4m denitrifying repB -0.5 +0.4 -0.4 -0.1 -0.3
carbon source carbon source Sucrose 0.25mM +0.4 -1.3 -0.0 -0.1 +0.1
carbon source L-Arabinose (C) -0.4 -0.6 +0.2 -0.0 -0.0
carbon source L-Valine (C) -0.4 +0.5 -0.5 -0.2 -0.1
nitrogen source Cytosine (N) -0.0 -0.5 -0.3 +0.2 +0.2
stress Cephalothin 2.5 mg/ml -0.6 +0.5 -0.1 -0.1 +0.0
stress 1-ethyl-3-methylimidazolium lysine 5 mM +0.5 -0.4 +0.1 -0.3 -0.2
nitrogen source nitrogen source nitrate 20mM -0.3 -0.4 +0.3 +0.1 +0.1
carbon source carbon source Sucrose 0.25mM +0.3 -0.8 -0.1 -0.0 +0.4
carbon source octanoate (C) -0.1 +0.5 -0.7 +0.0 +0.1
carbon source carbon source Sucrose 1mM +0.6 -0.5 +0.0 -0.1 -0.2
stress Gentamicin 0.001 mg/ml +0.4 -0.2 -0.4 +0.3 -0.2
nitrogen source L-Methionine (N) +0.3 +0.2 -0.3 -0.1 -0.2
stress Choline chloride 200 mM +0.4 -0.4 -0.2 +0.1 +0.2
denitrifying Nitrate reduction, replicate C t1 +0.3 +0.1 +0.2 +0.2 -0.4
carbon source carbon source Sucrose 5mM +0.6 -0.3 -0.1 +0.1 +0.2
carbon source D-Mannose (C) -0.1 +0.7 -0.2 +0.1 +0.2
pH Minimal media pH9 +0.3 +0.1 +0.4 +0.2 -0.2
carbon source L-Alanine (C) +0.1 +0.9 -0.1 +0.1 -0.1
denitrifying Nitrate reduction, replicate A t2 +0.7 +0.1 -0.2 +0.2 +0.0
carbon source Cytidine (C) +0.2 +0.9 -0.1 -0.0 +0.0
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.6 +0.3 -0.1 +0.3 +0.1
temperature LB 37C +0.2 +0.9 +0.3 +0.6 -0.0
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