Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_910 and Pf1N1B4_911 overlap by 11 nucleotidesPf1N1B4_911 and Pf1N1B4_912 are separated by 359 nucleotidesPf1N1B4_912 and Pf1N1B4_913 overlap by 4 nucleotidesPf1N1B4_913 and Pf1N1B4_914 are separated by 65 nucleotides Pf1N1B4_910 - Cyanate transport protein CynX, at 1,036,223 to 1,037,539 _910 Pf1N1B4_911 - Transcriptional regulator, GntR family, at 1,037,529 to 1,038,155 _911 Pf1N1B4_912 - Toxin mRNA interferase YgiU, at 1,038,515 to 1,038,667 _912 Pf1N1B4_913 - FIG00958224: hypothetical protein, at 1,038,664 to 1,039,152 _913 Pf1N1B4_914 - ABC-type polar amino acid transport system, ATPase component, at 1,039,218 to 1,039,982 _914
Group Condition Pf1N1B4_910 Pf1N1B4_911 Pf1N1B4_912 Pf1N1B4_913 Pf1N1B4_914
carbon source carbon source Sucrose 0.5mM +0.0 -0.5 -1.0 -0.1 -1.5
anaerobic Nitrate reduction -1.0 -0.2 -0.2 -0.0 -0.4
stress Spectinomycin 0.05 mg/ml -0.3 -0.1 -0.5 -0.2 -0.5
carbon source carbon source Sucrose 5mM -0.4 +0.1 -0.7 -0.3 -0.3
nitrogen source Ammonium chloride (N) -0.4 -0.1 -0.6 +0.0 -0.4
carbon source carbon source Sucrose 20mM -0.8 -0.2 +0.1 -0.2 -0.2
carbon source L-Leucine (C) -0.6 -0.0 -0.2 +0.2 -0.6
nitrogen source L-Leucine (N) -0.1 -0.2 +0.3 -0.2 -0.8
carbon source carbon source Sucrose 1mM -0.8 -0.3 +0.0 +0.6 -0.5
carbon source carbon source Sucrose 0.25mM -0.4 +0.4 -0.5 +0.3 -0.8
stress Cisplatin 0.006 mg/ml +0.2 -0.1 -1.2 -0.2 +0.4
carbon source carbon source Sucrose 0.25mM +0.4 +0.1 -0.4 +0.4 -1.3
stress Aluminum chloride 2.5 mM -0.6 -0.3 -0.5 +0.1 +0.5
temperature LB 37C -1.1 -0.1 +0.4 +0.1 +0.0
nitrogen source nitrogen source nitrite 0.1mM +0.1 +0.4 -0.6 -0.1 -0.4
denitrifying Nitrate reduction, replicate C -1.0 +0.3 -0.2 +0.6 +0.1
carbon source L-Alanine (C) -1.0 -0.2 +0.0 +0.1 +0.9
carbon source D-Trehalose (C) -0.7 -0.2 +0.2 -0.0 +0.6
carbon source Glycerol (C) -0.7 +0.1 -0.1 -0.0 +0.7
carbon source octanoate (C) +0.3 -0.3 -0.3 -0.1 +0.5
temperature LB 37C -0.3 -0.3 -0.3 +0.2 +0.9
stress Cephalothin 2.5 mg/ml -0.2 +0.2 +0.2 -0.6 +0.5
pH Minimal media pH9 -0.2 +0.2 -0.6 +0.5 +0.2
carbon source carbon source Sucrose 5mM -0.2 -0.1 +0.4 +0.6 -0.3
stress Chloride 300 mM -0.4 +0.3 +0.5 +0.4 -0.1
carbon source Cytidine (C) -0.0 -0.1 -0.3 +0.2 +0.9
anaerobic N2E2wt with N1B4m denitrifying repB +0.3 +0.3 +0.3 -0.5 +0.4
stress Sisomicin 0.001 mg/ml +0.3 +0.0 +0.4 +0.5 -0.3
stress Choline Lysine 6 mM +0.6 -0.1 +0.5 +0.6 -0.2
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 -0.4 +0.5 +0.6 +0.6 +0.3
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