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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_746 and Pf1N1B4_747 are separated by 325 nucleotides
Pf1N1B4_747 and Pf1N1B4_748 are separated by 234 nucleotides
Pf1N1B4_748 and Pf1N1B4_749 are separated by 2502 nucleotides
Pf1N1B4_749 and Pf1N1B4_750 overlap by 4 nucleotides
Pf1N1B4_746 - Alkyl hydroperoxide reductase subunit C-like protein, at 848,558 to 849,160
_746
Pf1N1B4_747 - Bacterioferritin-associated ferredoxin, at 849,486 to 849,704
_747
Pf1N1B4_748 - hypothetical protein, at 849,939 to 850,139
_748
Pf1N1B4_749 - hypothetical protein, at 852,642 to 852,824
_749
Pf1N1B4_750 - hypothetical protein, at 852,821 to 853,477
_750
Group
Condition
Pf1N1B4
_746
Pf1N1B4
_747
Pf1N1B4
_748
Pf1N1B4
_749
Pf1N1B4
_750
carbon source
L-Arabinose (C)
N.D.
+0.0
-0.6
-1.5
-0.4
temperature
LB 37C
N.D.
-0.2
-1.8
+0.6
-1.0
carbon source
Carnitine Hydrochloride (C)
N.D.
-0.2
-0.0
-0.9
-0.8
carbon source
D,L-Lactate (C)
N.D.
-0.1
-0.4
-0.8
-0.4
pH
Minimal media pH9
N.D.
+0.0
+0.1
-1.3
-0.6
carbon source
pyruvate (C)
N.D.
-0.1
-0.3
-1.2
+0.0
carbon source
D-Galactose (C)
N.D.
+0.3
+0.1
-1.6
-0.2
lb
LB
N.D.
-0.7
+0.1
-1.0
+0.2
carbon source
carbon source Sucrose 1mM
N.D.
+0.4
-0.2
-1.6
+0.1
anaerobic
Nitrate reduction
N.D.
+0.1
-0.9
+0.1
-0.5
phagefrs
Time16-FRS
N.D.
+0.0
-0.4
-1.0
+0.2
nophagecontrol
Time16-nophage
N.D.
+0.3
-0.4
-0.5
-0.3
stress
Benzethonium chloride 0.0125 mM
N.D.
-0.6
-0.4
-0.3
+0.3
stress
Fusidic 0.125 mg/ml
N.D.
-0.4
-0.7
-0.4
+0.6
carbon source
carbon source Sucrose 5mM
N.D.
+0.1
+0.3
-1.4
+0.2
stress
Paraquat dichloride 0.016 mg/mL
N.D.
-0.3
-0.9
+0.5
+0.3
carbon source
carbon source Sucrose 0.25mM
N.D.
+0.3
-0.2
-0.7
+0.4
stress
nitrate 100 mM
N.D.
-0.2
-0.2
+1.0
-0.8
denitrifying
Nitrate reduction, replicate C
N.D.
+0.5
+0.3
-0.8
-0.1
nitrogen source
nitrogen source nitrite 0.5mM
N.D.
+0.4
+0.1
-0.8
+0.3
carbon source
carbon source Sucrose 1mM
N.D.
+0.4
+0.0
-0.8
+0.5
stress
Carbenicillin 2 mg/ml
N.D.
-0.5
-0.2
+0.8
+0.1
carbon source
L-Alanine (C)
N.D.
-0.2
+0.3
+0.8
-0.5
carbon source
carbon source Sucrose 0.5mM
N.D.
+1.1
-0.2
-0.4
-0.1
carbon source
L-Isoleucine (C)
N.D.
-0.2
-0.1
+1.0
-0.3
nitrogen source
D-Glucosamine Hydrochloride (N)
N.D.
+0.3
-0.5
+0.9
+0.1
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1
N.D.
+0.5
-0.3
+0.9
-0.1
stress
Thallium(I) acetate 0.008 mg/ml
N.D.
+0.5
+0.6
+0.2
-0.3
lb
LB
N.D.
+0.3
+0.2
+1.0
-0.3
stress
D-Cycloserine 0.1 mg/ml
N.D.
+0.2
+0.1
+1.2
+0.1
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