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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_719 and Pf1N1B4_720 are separated by 13 nucleotides
Pf1N1B4_720 and Pf1N1B4_721 are separated by 444 nucleotides
Pf1N1B4_721 and Pf1N1B4_722 are separated by 4 nucleotides
Pf1N1B4_722 and Pf1N1B4_723 are separated by 148 nucleotides
Pf1N1B4_719 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 820,108 to 821,256
_719
Pf1N1B4_720 - RND multidrug efflux transporter; Acriflavin resistance protein, at 821,270 to 824,296
_720
Pf1N1B4_721 - InaA protein, at 824,741 to 825,454
_721
Pf1N1B4_722 - SAM-dependent methyltransferases, at 825,459 to 826,127
_722
Pf1N1B4_723 - two-component system sensor protein, at 826,276 to 827,556
_723
Group
Condition
Pf1N1B4
_719
Pf1N1B4
_720
Pf1N1B4
_721
Pf1N1B4
_722
Pf1N1B4
_723
carbon source
octanoate (C)
+0.0
+0.0
-0.9
-0.5
-2.7
stress
Aluminum chloride 2.5 mM
-0.1
-0.1
+0.4
-1.1
-2.7
lb
LB
-0.3
-0.1
+0.2
-2.1
+0.1
stress
Fusidic 0.125 mg/ml
-0.3
-0.3
-0.0
-1.9
+0.3
stress
Doxycycline hyclate 0.0001 mg/ml
-0.3
-0.2
-0.3
+0.7
-2.0
anaerobic
N2E2wt with N1B4m denitrifying repB
-0.1
+0.1
+0.4
-2.0
-0.2
carbon source
Fumarate (C)
-0.1
+0.1
-0.3
-1.2
-0.3
carbon source
D-Alanine (C)
-0.1
-0.1
+0.0
-1.5
+0.0
lb
LB
-0.1
+0.0
+0.2
-2.0
+0.2
carbon source
D-Lactate (C)
+0.1
+0.1
-0.0
-2.0
+0.2
nitrogen source
L-Methionine (N)
-0.2
-0.0
-0.3
-1.2
+0.2
stress
Rifampicin 0.004 mg/ml
-0.1
+0.3
-0.7
+0.4
-1.2
carbon source
carbon source Sucrose 1mM
-0.5
+0.0
+0.3
-0.9
-0.2
stress
Cisplatin 0.006 mg/ml
+0.3
-0.1
-0.3
-1.8
+0.6
nitrogen source
nitrogen source nitrite 0.1mM
+0.1
-0.1
+0.3
-1.1
-0.3
nitrogen source
nitrogen source nitrite 0.1mM
-0.0
+0.2
+0.2
-0.4
-1.2
stress
Nalidixic 0.004 mg/ml
+0.3
-0.3
+0.2
-0.8
-0.6
stress
Chloride 200 mM
+0.1
-0.2
+0.2
-1.5
+0.4
carbon source
L-Alanine (C)
+0.3
+0.1
-0.1
-1.2
+0.2
temperature
LB 37C
+0.0
-0.2
+0.2
-1.2
+0.6
carbon source
D-Fructose (C)
+0.0
-0.1
-0.1
-0.8
+0.7
pH
Minimal media pH6
+0.2
-0.0
+0.3
-1.0
+0.3
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.4
+0.1
+0.3
-0.8
-0.2
temperature
LB 37C
-0.0
+0.2
+0.5
-1.4
+0.7
carbon source
carbon source Sucrose 0.5mM
+0.6
+0.3
-0.5
+0.2
-0.4
nitrogen source
nitrogen source nitrate 20mM
-0.2
+0.2
+0.1
-0.7
+0.7
stress
Choline Lysine 6 mM
+0.1
-0.1
+0.3
-1.2
+1.2
stress
nitrate 100 mM
+0.0
-0.0
+0.2
-1.3
+1.6
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
+0.1
+0.4
-0.7
+0.7
pH
Minimal media pH9
+0.2
+0.0
+0.3
+1.2
+1.4
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