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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_684 and Pf1N1B4_685 overlap by 1 nucleotides
Pf1N1B4_685 and Pf1N1B4_686 are separated by 292 nucleotides
Pf1N1B4_686 and Pf1N1B4_687 are separated by 241 nucleotides
Pf1N1B4_687 and Pf1N1B4_688 are separated by 0 nucleotides
Pf1N1B4_684 - C4-dicarboxylate transport sensor protein, at 781,463 to 783,265
_684
Pf1N1B4_685 - Nitrogen regulation protein NR(I), at 783,265 to 784,599
_685
Pf1N1B4_686 - Dicarboxylate MFS transporter, at 784,892 to 786,211
_686
Pf1N1B4_687 - Nitrilotriacetate monooxygenase component B (EC 1.14.13.-), at 786,453 to 787,082
_687
Pf1N1B4_688 - FIG00955483: hypothetical protein, at 787,083 to 787,313
_688
Group
Condition
Pf1N1B4
_684
Pf1N1B4
_685
Pf1N1B4
_686
Pf1N1B4
_687
Pf1N1B4
_688
carbon source
a-Ketoglutaric (C)
-2.9
N.D.
-2.7
-0.3
+0.4
carbon source
a-Ketoglutaric (C)
-2.7
N.D.
-2.9
-0.1
+0.3
carbon source
carbon source Sucrose 5mM
+0.0
N.D.
-0.0
+0.2
-3.6
carbon source
carbon source Sucrose 1mM
-0.2
N.D.
-0.2
+0.6
-3.5
carbon source
carbon source Sucrose 0.25mM
-0.0
N.D.
-0.3
-0.8
-0.8
temperature
LB 37C
-0.4
N.D.
+0.1
-0.4
-1.2
anaerobic
Nitrate reduction
-0.2
N.D.
-0.3
+0.1
-1.5
carbon source
L-Lactate (C)
-0.3
N.D.
-0.1
+0.1
-1.5
stress
nitrate 100 mM
-0.3
N.D.
-0.2
-0.2
-1.0
carbon source
carbon source Sucrose 0.25mM
+0.4
N.D.
-0.3
+0.0
-1.5
carbon source
D-Fructose (C)
-0.0
N.D.
-0.0
+0.4
-1.7
temperature
LB 37C
-0.2
N.D.
-0.3
+0.2
-1.0
denitrifying
Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1
-0.5
N.D.
+0.1
+0.4
-1.0
nitrogen source
D-Glucosamine Hydrochloride (N)
-0.4
N.D.
-0.3
+0.5
+0.5
nitrogen source
Cytosine (N)
-0.2
N.D.
-0.1
-0.3
+1.1
carbon source
L-Lactate (C)
-0.3
N.D.
-0.3
+0.4
+0.9
nitrogen source
Ammonium chloride (N)
-0.1
N.D.
+0.1
-0.4
+1.2
carbon source
Glycerol (C)
-0.4
N.D.
+0.0
+0.5
+1.0
carbon source
Putrescine (C)
-0.4
N.D.
+0.1
+0.5
+1.0
carbon source
L-Alanine (C)
-0.1
N.D.
+0.2
+0.7
+0.8
carbon source
D-Galacturonic Acid (C)
-0.0
N.D.
-0.0
+0.5
+1.2
carbon source
casaminos (C)
-0.0
N.D.
+0.2
+0.3
+1.1
stress
D-Cycloserine 0.1 mg/ml
-0.1
N.D.
+0.1
+0.4
+1.3
carbon source
octanoate (C)
+0.1
N.D.
+0.0
+0.5
+1.0
carbon source
Cytidine (C)
+0.1
N.D.
+0.2
+0.1
+1.4
carbon source
D-Alanine (C)
-0.1
N.D.
+0.2
+0.6
+1.3
carbon source
L-Glutamine (C)
+0.0
N.D.
+0.2
+0.4
+1.3
carbon source
L-Isoleucine (C)
-0.1
N.D.
+0.2
+0.3
+1.7
carbon source
Carnitine Hydrochloride (C)
+0.1
N.D.
+0.2
+0.5
+1.3
carbon source
L-Leucine (C)
+0.1
N.D.
-0.1
+0.6
+1.5
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