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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_671 and Pf1N1B4_672 overlap by 4 nucleotides
Pf1N1B4_672 and Pf1N1B4_673 overlap by 4 nucleotides
Pf1N1B4_673 and Pf1N1B4_674 are separated by 208 nucleotides
Pf1N1B4_674 and Pf1N1B4_675 are separated by 854 nucleotides
Pf1N1B4_671 - 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases, at 767,032 to 768,576
_671
Pf1N1B4_672 - FIG00955538: hypothetical protein, at 768,573 to 769,736
_672
Pf1N1B4_673 - MoxR-like ATPases, at 769,733 to 770,734
_673
Pf1N1B4_674 - POSSIBLE CONSERVED MEMBRANE PROTEIN, at 770,943 to 772,274
_674
Pf1N1B4_675 - hypothetical protein, at 773,129 to 773,347
_675
Group
Condition
Pf1N1B4
_671
Pf1N1B4
_672
Pf1N1B4
_673
Pf1N1B4
_674
Pf1N1B4
_675
temperature
LB 37C
+0.5
-0.4
-0.3
+0.2
-2.8
stress
Tetracycline 0.0004 mg/ml
-0.2
-0.2
-0.5
+0.1
-0.8
carbon source
carbon source Sucrose 0.25mM
+0.1
-1.0
-0.1
+0.0
-0.5
pH
Minimal media pH8
-0.1
-0.3
-0.3
+0.1
-1.0
temperature
LB 37C
-0.2
-0.9
-0.2
+0.1
-0.4
carbon source
D-Ribose (C)
+0.1
-0.1
-0.8
+0.0
-0.7
stress
Spectinomycin 0.025 mg/ml
-0.1
-0.3
+0.1
+0.1
-1.2
carbon source
carbon source Sucrose 20mM
+0.0
-0.7
+0.7
+0.2
-1.6
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.2
+0.8
-1.6
+0.0
-0.7
carbon source
L-Asparagine (C)
-0.2
-0.9
-0.6
+0.3
+0.3
carbon source
D-Glucose (C)
+0.3
+0.4
-1.5
+0.1
-0.1
anaerobic
Nitrate reduction
-0.3
+0.5
-0.8
+0.1
-0.2
stress
Doxycycline hyclate 0.0001 mg/ml
-0.0
+0.3
+1.0
-0.2
-1.5
carbon source
L-Isoleucine (C)
-0.1
+0.1
-1.4
+0.3
+0.7
stress
Aluminum chloride 2.5 mM
-0.3
-0.2
-0.2
-0.2
+0.8
anaerobic
Nitrate reduction
+0.0
+0.1
-1.3
+0.0
+1.0
stress
1-ethyl-3-methylimidazolium lysine 5 mM
+0.1
-0.3
+0.6
+0.2
-0.6
nitrogen source
L-Methionine (N)
-0.3
-0.6
+0.0
-0.1
+1.0
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.0
+0.3
-0.8
+0.5
+0.1
nitrogen source
nitrogen source nitrite 0.1mM
+0.1
+1.0
-0.4
+0.1
-0.8
carbon source
carbon source Sucrose 1mM
-0.2
+0.5
-0.3
-0.3
+0.7
stress
Cisplatin 0.006 mg/ml
+0.3
+0.7
-0.6
-0.0
-0.1
carbon source
carbon source Sucrose 0.5mM
-0.1
+0.6
+0.3
+0.5
-0.7
carbon source
Glycerol (C)
-0.2
+0.4
-0.4
-0.0
+0.9
stress
Carbenicillin 2 mg/ml
-0.1
+0.9
+0.3
+0.2
-0.3
stress
Fusidic 0.0625 mg/ml
-0.1
+0.3
+0.4
+0.1
+0.8
nitrogen source
L-Leucine (N)
-0.2
+0.5
+0.3
+0.4
+0.5
stress
nitrate 100 mM
+0.2
+1.0
+0.6
+0.3
-0.5
nitrogen source
nitrate (N)
-0.0
+0.1
+0.6
+0.5
+0.5
stress
Cephalothin 2.5 mg/ml
-0.2
+0.4
+0.6
+0.3
+0.8
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