Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_605 and Pf1N1B4_606 overlap by 69 nucleotidesPf1N1B4_606 and Pf1N1B4_607 are separated by 122 nucleotidesPf1N1B4_607 and Pf1N1B4_608 are separated by 109 nucleotidesPf1N1B4_608 and Pf1N1B4_609 are separated by 164 nucleotides Pf1N1B4_605 - hypothetical protein, at 698,097 to 698,288 _605 Pf1N1B4_606 - Iron siderophore sensor protein, at 698,220 to 699,128 _606 Pf1N1B4_607 - TonB-dependent hemin , ferrichrome receptor, at 699,251 to 701,812 _607 Pf1N1B4_608 - Heme oxygenase HemO, associated with heme uptake, at 701,922 to 702,530 _608 Pf1N1B4_609 - FIG039061: hypothetical protein related to heme utilization, at 702,695 to 703,090 _609
Group Condition Pf1N1B4_605 Pf1N1B4_606 Pf1N1B4_607 Pf1N1B4_608 Pf1N1B4_609
carbon source carbon source Sucrose 0.25mM N.D. -2.7 -0.1 +0.3 -1.2
carbon source carbon source Sucrose 0.5mM N.D. -0.3 -0.3 -1.2 -1.6
nitrogen source nitrogen source nitrite 0.1mM N.D. -1.8 -0.2 -1.0 -0.4
temperature LB 37C N.D. -2.0 +0.1 -1.5 +0.1
temperature LB 37C N.D. -1.8 +0.1 -1.7 +0.2
stress 1-ethyl-3-methylimidazolium lysine 5 mM N.D. -1.2 -0.3 +0.1 -1.7
stress methylglyoxal 0.008 vol% N.D. -2.1 -0.1 -0.0 -0.7
stress Chloride 200 mM N.D. -2.1 -0.1 +0.1 +0.1
stress Chlorite 1 mM N.D. -1.2 +0.0 -0.1 -0.5
carbon source carbon source Sucrose 5mM N.D. -2.4 -0.0 +0.6 +0.5
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A N.D. -1.7 -0.1 +0.2 +0.3
nitrogen source D-Glucosamine Hydrochloride (N) N.D. -0.8 -0.0 -0.8 +0.6
nitrogen source nitrogen source nitrite 0.1mM N.D. +0.4 -0.2 -0.3 -1.0
nitrogen source L-Leucine (N) N.D. -1.3 -0.1 -0.0 +0.4
stress Choline chloride 200 mM N.D. -1.1 -0.2 +0.7 -0.2
anaerobic N2E2wt with N1B4m denitrifying repB N.D. -1.3 +0.1 +0.4 +0.1
carbon source octanoate (C) N.D. -1.4 -0.2 +0.4 +0.7
stress nitrite 10 mM N.D. +0.7 +0.2 -0.6 -0.5
carbon source D-Lactate (C) N.D. -0.1 -0.3 +0.9 -0.5
carbon source carbon source Sucrose 0.25mM N.D. +0.6 +0.0 +0.4 -1.0
carbon source D-Glucose (C) N.D. +0.3 -0.1 -1.0 +0.7
carbon source butyrate (C) N.D. -1.0 -0.1 +0.7 +0.4
carbon source carbon source Sucrose 1mM N.D. +0.4 -0.1 +0.6 -0.9
stress nitrite 10 mM N.D. -0.8 -0.0 +0.8 +0.3
anaerobic Nitrate reduction N.D. -1.1 -0.0 +0.7 +0.8
lb LB N.D. -0.4 +0.0 +1.3 -0.4
phagefrs Time16-FRS N.D. +0.5 +0.1 +0.6 -0.6
stress Doxycycline hyclate 0.0001 mg/ml N.D. -0.4 -0.2 +1.0 +0.3
stress Benzethonium chloride 0.0125 mM N.D. +0.4 +0.2 +0.9 -0.3
stress Fusidic 0.0625 mg/ml N.D. -0.1 +0.0 +1.4 +0.5
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