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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_6043 and Pf1N1B4_6044 are separated by 230 nucleotides
Pf1N1B4_6044 and Pf1N1B4_6045 are separated by 243 nucleotides
Pf1N1B4_6045 and Pf1N1B4_6046 are separated by 3806 nucleotides
Pf1N1B4_6046 and Pf1N1B4_6055 are separated by 267 nucleotides
Pf1N1B4_6043 - membrane protein, putative, at 505,351 to 506,565
_6043
Pf1N1B4_6044 - hypothetical protein, at 506,796 to 507,065
_6044
Pf1N1B4_6045 - CigR (Putative inner membrane protein), at 507,309 to 507,545
_6045
Pf1N1B4_6046 - hypothetical protein, at 511,352 to 512,371
_6046
Pf1N1B4_6055 - tRNA-Val-GAC, at 512,639 to 512,712
_6055
Group
Condition
Pf1N1B4
_6043
Pf1N1B4
_6044
Pf1N1B4
_6045
Pf1N1B4
_6046
Pf1N1B4
_6055
carbon source
carbon source Sucrose 1mM
-0.7
N.D.
-1.3
-0.5
N.D.
stress
Benzethonium chloride 0.0125 mM
-0.2
N.D.
-1.3
-0.4
N.D.
carbon source
D-Lactate (C)
-0.3
N.D.
-1.3
-0.3
N.D.
carbon source
carbon source Sucrose 5mM
+0.0
N.D.
-2.0
+0.1
N.D.
stress
nitrite 10 mM
-0.2
N.D.
-0.9
-0.5
N.D.
nitrogen source
nitrogen source nitrate 20mM
-0.3
N.D.
-1.1
-0.3
N.D.
carbon source
L-Glutamic (C)
-0.3
N.D.
-0.8
-0.5
N.D.
carbon source
Glycerol (C)
-0.2
N.D.
-0.8
-0.5
N.D.
carbon source
Uridine (C)
-0.1
N.D.
-1.1
-0.3
N.D.
carbon source
L-Malic (C)
-0.2
N.D.
-0.7
-0.4
N.D.
carbon source
D-Galacturonic Acid (C)
-0.1
N.D.
-0.8
-0.3
N.D.
carbon source
L-Lactate (C)
-0.1
N.D.
-0.7
-0.5
N.D.
stress
Paraquat dichloride 0.016 mg/mL
-0.3
N.D.
-0.8
-0.2
N.D.
lb
LB
-0.2
N.D.
-0.5
-0.4
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
-0.2
N.D.
-0.5
-0.4
N.D.
nitrogen source
L-Isoleucine (N)
-0.3
N.D.
-0.6
-0.2
N.D.
carbon source
L-Glutamine (C)
+0.2
N.D.
-1.1
-0.1
N.D.
stress
Spectinomycin 0.05 mg/ml
+0.1
N.D.
-0.7
-0.5
N.D.
carbon source
a-Ketoglutaric (C)
-0.3
N.D.
+0.2
-0.7
N.D.
carbon source
carbon source Sucrose 0.25mM
-0.1
N.D.
+0.4
-1.0
N.D.
stress
Doxycycline hyclate 0.0001 mg/ml
-0.1
N.D.
+0.4
-0.7
N.D.
lb
LB
-0.4
N.D.
+0.4
-0.3
N.D.
carbon source
octanoate (C)
+0.2
N.D.
+0.3
-0.8
N.D.
lb
LB
-0.4
N.D.
+0.5
-0.4
N.D.
stress
Cholin acetate 10 mM
-0.2
N.D.
+0.7
-0.4
N.D.
stress
Carbenicillin 2 mg/ml
-0.1
N.D.
+0.7
-0.4
N.D.
carbon source
D-Lactate (C)
-0.4
N.D.
+0.7
-0.1
N.D.
stress
copper (II) chloride 2.5 mM
-0.1
N.D.
+0.8
-0.4
N.D.
nitrogen source
Cytidine (N)
-0.1
N.D.
+1.0
+0.2
N.D.
temperature
LB 37C
+0.2
N.D.
+1.0
+0.2
N.D.
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