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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_5858 and Pf1N1B4_5859 are separated by 229 nucleotides
Pf1N1B4_5859 and Pf1N1B4_5860 are separated by 213 nucleotides
Pf1N1B4_5860 and Pf1N1B4_5861 are separated by 555 nucleotides
Pf1N1B4_5861 and Pf1N1B4_5862 are separated by 52 nucleotides
Pf1N1B4_5858 - carboxyphosphonoenolpyruvate phosphonomutase, putative, at 291,317 to 292,186
_5858
Pf1N1B4_5859 - Glutamate carboxypeptidase (EC 3.4.17.11), at 292,416 to 293,657
_5859
Pf1N1B4_5860 - Two-component response regulator, at 293,871 to 294,806
_5860
Pf1N1B4_5861 - Alpha/beta hydrolase fold (EC 3.8.1.5), at 295,362 to 296,288
_5861
Pf1N1B4_5862 - Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD, at 296,341 to 297,840
_5862
Group
Condition
Pf1N1B4
_5858
Pf1N1B4
_5859
Pf1N1B4
_5860
Pf1N1B4
_5861
Pf1N1B4
_5862
carbon source
carbon source Sucrose 0.25mM
+0.0
-0.1
-3.5
-0.4
-0.2
temperature
LB 37C
-0.4
-2.2
+0.5
-0.5
-0.1
temperature
LB 37C
-0.7
-0.7
-0.4
+0.4
-1.1
anaerobic
N2E2wt with N1B4m denitrifying repA
-2.1
+0.3
-0.2
-0.1
-0.1
anaerobic
Nitrate reduction
-0.4
-0.6
-0.8
+0.3
-0.2
nitrogen source
L-Methionine (N)
-0.3
-0.9
-1.0
-0.0
+0.5
denitrifying
Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A
-1.2
-0.3
+0.0
-0.4
+0.4
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.5
-0.4
-0.7
-0.3
-0.5
carbon source
L-Lactate (C)
-0.7
-0.5
+0.6
-0.4
-0.1
carbon source
L-Alanine (C)
+0.3
+0.5
-1.4
-0.1
-0.1
stress
Bacitracin 2 mg/ml
+0.1
-0.0
-1.3
+0.7
+0.0
stress
1-ethyl-3-methylimidazolium lysine 5 mM
+0.4
-1.2
+0.1
-0.1
+0.3
stress
copper (II) chloride 2.5 mM
-0.2
-1.1
+0.7
+0.2
-0.1
carbon source
Cytidine (C)
+0.2
+0.4
-1.4
+0.2
+0.3
carbon source
Putrescine (C)
+0.6
-0.1
-1.4
+0.4
+0.0
nitrogen source
Putrescine (N)
+0.6
+0.3
-1.2
+0.1
-0.1
stress
Doxycycline hyclate 0.0001 mg/ml
+0.5
+0.6
-0.9
-0.2
+0.1
denitrifying
Nitrate reduction, replicate C t2
-0.2
-0.3
+1.0
+0.5
-0.6
lb
LB
-0.4
+0.3
+1.1
-0.3
-0.3
nitrogen source
Thymine (N)
-0.2
+0.8
-0.7
+0.4
+0.2
carbon source
casaminos (C)
+0.5
+0.3
-0.9
+0.3
+0.6
pH
Minimal media pH9
-0.4
+0.3
+0.3
+0.9
-0.4
carbon source
carbon source Sucrose 5mM
+0.5
+0.2
+0.9
-0.7
+0.0
nitrogen source
L-Leucine (N)
+0.7
+0.7
-0.3
-0.5
+0.2
lb
LB
+0.4
+0.7
-0.6
-0.1
+0.6
carbon source
carbon source Sucrose 0.25mM
+0.8
-0.2
+1.0
-0.4
-0.2
stress
Fusidic 0.125 mg/ml
+0.5
-0.3
+0.3
+0.5
+0.6
carbon source
carbon source Sucrose 1mM
+0.3
-0.0
+1.2
+0.6
-0.3
stress
Aluminum chloride 2.5 mM
+0.8
+0.8
-0.7
+0.2
+0.7
nitrogen source
Cytosine (N)
+0.1
+0.8
-0.3
+1.0
+0.3
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