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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_576 and Pf1N1B4_577 are separated by 123 nucleotides
Pf1N1B4_577 and Pf1N1B4_578 are separated by 45 nucleotides
Pf1N1B4_578 and Pf1N1B4_579 are separated by 83 nucleotides
Pf1N1B4_579 and Pf1N1B4_580 are separated by 11 nucleotides
Pf1N1B4_576 - hypothetical protein, at 669,695 to 669,835
_576
Pf1N1B4_577 - Lysophospholipase (EC 3.1.1.5); Monoglyceride lipase (EC 3.1.1.23); putative, at 669,959 to 670,903
_577
Pf1N1B4_578 - enoyl-CoA hydratase, R-specific, at 670,949 to 671,419
_578
Pf1N1B4_579 - Membrane fusion component of tripartite multidrug resistance system, at 671,503 to 672,363
_579
Pf1N1B4_580 - FIG00953813: hypothetical protein, at 672,375 to 672,581
_580
Group
Condition
Pf1N1B4
_576
Pf1N1B4
_577
Pf1N1B4
_578
Pf1N1B4
_579
Pf1N1B4
_580
carbon source
octanoate (C)
+0.4
-0.3
-1.1
-1.5
-2.0
stress
Carbenicillin 2 mg/ml
-0.4
+0.1
-2.7
-0.3
-0.2
carbon source
L-Asparagine (C)
-0.8
-0.3
-2.2
+0.1
-0.3
nitrogen source
L-Citrulline (N)
+0.0
-0.1
-3.1
+0.1
-0.1
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.2
+0.1
-2.5
-0.2
-0.2
nitrogen source
L-Arginine (N)
-0.3
-0.0
-2.5
-0.1
+0.0
pH
Minimal media pH6
+0.2
-0.2
-2.5
-0.3
+0.0
stress
5-Hydroxymethylfurfural 2.5 mM
-1.1
-0.3
-0.5
-0.6
-0.3
carbon source
D-Alanine (C)
-0.2
-0.1
-2.5
-0.0
+0.1
phagefrs
Time16-FRS
+0.3
+0.1
-2.6
-0.3
-0.1
carbon source
m-Inositol (C)
-0.2
-0.4
-1.8
+0.1
-0.3
nophagecontrol
Time16-nophage
+0.2
-0.3
-1.8
-0.5
-0.2
nitrogen source
Ammonium chloride (N)
-0.7
-0.3
-1.3
-0.4
+0.4
anaerobic
N2E2wt with N1B4m denitrifying repA
-0.2
-0.2
-2.5
+0.3
+0.3
phagefrs
Time16-FRS
+0.4
+0.1
-2.2
-0.4
-0.2
carbon source
D-Trehalose (C)
-0.2
-0.3
-1.9
-0.1
+0.3
nitrogen source
L-Histidine (N)
+0.3
-0.1
-2.3
-0.0
+0.1
nophagecontrol
Time16-nophage
+0.5
-0.1
-1.9
-0.1
-0.4
nitrogen source
L-Glutamic (N)
+0.2
-0.1
-2.7
+0.2
+0.3
nitrogen source
Putrescine (N)
+0.1
+0.1
-2.3
+0.2
+0.1
carbon source
L-Leucine (C)
-0.0
+0.2
-2.4
+0.5
+0.2
lb
LB
+0.6
-0.2
-1.9
-0.0
+0.0
carbon source
carbon source Sucrose 0.5mM
-1.2
-0.9
+0.7
-0.3
+0.1
carbon source
Fumarate (C)
+0.5
+0.1
-2.0
-0.1
+0.1
stress
Dimethyl Sulfoxide 5 vol%
-0.6
+0.2
-1.5
+0.3
+0.3
anaerobic
N2E2wt with N1B4m denitrifying repA
-0.2
+0.3
-2.1
+0.2
+0.6
carbon source
D,L-Lactate (C)
+0.5
-0.3
-1.5
+0.2
+0.4
stress
methylglyoxal 0.008 vol%
-0.8
-0.7
+1.7
-0.7
-0.0
stress
Doxycycline hyclate 0.0001 mg/ml
-0.8
-0.3
+1.1
+0.4
+0.2
stress
Fusidic 0.125 mg/ml
-0.3
-0.7
+2.1
-0.0
+0.2
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