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Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_5686 and Pf1N1B4_5687 are separated by 132 nucleotides
Pf1N1B4_5687 and Pf1N1B4_5688 are separated by 57 nucleotides
Pf1N1B4_5688 and Pf1N1B4_5689 are separated by 11 nucleotides
Pf1N1B4_5689 and Pf1N1B4_5690 are separated by 70 nucleotides
Pf1N1B4_5686 - Permease of the drug/metabolite transporter (DMT) superfamily, at 125,838 to 126,239
_5686
Pf1N1B4_5687 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 126,372 to 126,809
_5687
Pf1N1B4_5688 - hypothetical protein, at 126,867 to 127,196
_5688
Pf1N1B4_5689 - Lactoylglutathione lyase, at 127,208 to 127,600
_5689
Pf1N1B4_5690 - Putative TEGT family carrier/transport protein, at 127,671 to 128,387
_5690
Group
Condition
Pf1N1B4
_5686
Pf1N1B4
_5687
Pf1N1B4
_5688
Pf1N1B4
_5689
Pf1N1B4
_5690
stress
Sisomicin 0.001 mg/ml
N.D.
N.D.
-0.1
-0.6
-2.7
carbon source
carbon source Sucrose 1mM
N.D.
N.D.
-0.6
-0.5
-1.8
carbon source
octanoate (C)
N.D.
N.D.
-1.5
-0.3
-1.0
stress
Spectinomycin 0.05 mg/ml
N.D.
N.D.
-0.1
+0.0
-2.5
nitrogen source
Cytidine (N)
N.D.
N.D.
-0.9
+0.6
-1.8
nitrogen source
Adenine (N)
N.D.
N.D.
-0.8
-0.6
-0.6
pH
Minimal media pH9
N.D.
N.D.
-0.2
+0.3
-2.1
stress
nitrite 10 mM
N.D.
N.D.
-0.6
-0.2
-1.2
pH
Minimal media pH9
N.D.
N.D.
-0.5
-0.8
-0.6
stress
Gentamicin 0.001 mg/ml
N.D.
N.D.
+0.0
+0.1
-2.0
carbon source
D-Lactate (C)
N.D.
N.D.
-0.6
-0.5
-0.6
nitrogen source
nitrate (N)
N.D.
N.D.
-1.1
-0.5
-0.2
nophagecontrol
Time16-nophage
N.D.
N.D.
-0.4
-0.4
-0.9
carbon source
carbon source Sucrose 1mM
N.D.
N.D.
-0.2
-1.6
+0.2
nitrogen source
Uridine (N)
N.D.
N.D.
-0.6
-0.3
-0.7
lb
LB
N.D.
N.D.
-0.1
-0.3
-1.2
temperature
LB 37C
N.D.
N.D.
+0.0
-0.6
-1.1
carbon source
L-Glutamic (C)
N.D.
N.D.
-0.6
-0.7
-0.1
stress
Cisplatin 0.006 mg/ml
N.D.
N.D.
-0.3
-0.5
-0.7
nitrogen source
Thymine (N)
N.D.
N.D.
-0.9
-0.5
-0.0
stress
Spectinomycin 0.025 mg/ml
N.D.
N.D.
+0.3
-0.8
-0.8
carbon source
m-Inositol (C)
N.D.
N.D.
-1.0
+0.0
-0.4
carbon source
L-Arginine (C)
N.D.
N.D.
-0.3
-0.4
-0.7
stress
Chloride 300 mM
N.D.
N.D.
+0.0
+0.1
-1.2
stress
sodium fluoride 12.5 mM
N.D.
N.D.
-0.6
-0.6
+0.2
stress
Rifampicin 0.004 mg/ml
N.D.
N.D.
-0.2
+0.5
-0.8
nitrogen source
L-Methionine (N)
N.D.
N.D.
+0.5
-0.4
-0.5
denitrifying
Nitrate reduction, replicate C
N.D.
N.D.
-0.6
+0.4
+0.3
carbon source
carbon source Sucrose 5mM
N.D.
N.D.
+0.3
+0.6
-0.4
stress
Fusidic 0.125 mg/ml
N.D.
N.D.
-0.2
+0.7
+0.6
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