Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_5642 and Pf1N1B4_5643 overlap by 4 nucleotidesPf1N1B4_5643 and Pf1N1B4_5644 are separated by 9 nucleotidesPf1N1B4_5644 and Pf1N1B4_5645 are separated by 52 nucleotidesPf1N1B4_5645 and Pf1N1B4_5646 overlap by 6 nucleotides Pf1N1B4_5642 - ABC-type polar amino acid transport system, ATPase component, at 72,116 to 72,907 _5642 Pf1N1B4_5643 - Amino acid ABC transporter, permease protein, at 72,904 to 73,566 _5643 Pf1N1B4_5644 - amino acid ABC transporter, permease protein, at 73,576 to 74,238 _5644 Pf1N1B4_5645 - Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2), at 74,291 to 75,136 _5645 Pf1N1B4_5646 - hypothetical protein, at 75,131 to 75,280 _5646
Group Condition Pf1N1B4_5642 Pf1N1B4_5643 Pf1N1B4_5644 Pf1N1B4_5645 Pf1N1B4_5646
nitrogen source D-Glucosamine Hydrochloride (N) N.D. N.D. -0.7 -1.6 N.D.
nitrogen source Adenine (N) N.D. N.D. -0.8 -1.3 N.D.
stress Dimethyl Sulfoxide 5 vol% N.D. N.D. -0.6 -1.3 N.D.
temperature LB 37C N.D. N.D. -1.0 -0.7 N.D.
carbon source L-Isoleucine (C) N.D. N.D. -0.1 -1.4 N.D.
stress copper (II) chloride 2.5 mM N.D. N.D. -0.3 -1.1 N.D.
nitrogen source L-Isoleucine (N) N.D. N.D. -0.1 -1.3 N.D.
denitrifying Nitrate reduction, replicate B t2 N.D. N.D. -0.1 -1.2 N.D.
carbon source L-Histidine (C) N.D. N.D. -0.6 -0.7 N.D.
stress copper (II) chloride 2.5 mM N.D. N.D. -0.4 -0.8 N.D.
carbon source D-Gluconic Acid (C) N.D. N.D. -0.5 -0.6 N.D.
carbon source D-Fructose (C) N.D. N.D. -0.8 -0.3 N.D.
nitrogen source Cytidine (N) N.D. N.D. -0.4 -0.7 N.D.
stress 1-ethyl-3-methylimidazolium lysine 5 mM N.D. N.D. +0.2 -1.3 N.D.
stress Fusidic 0.0625 mg/ml N.D. N.D. +0.3 -1.0 N.D.
nitrogen source Ammonium chloride (N) N.D. N.D. +0.2 -0.9 N.D.
stress Gentamicin 0.001 mg/ml N.D. N.D. +0.6 -1.0 N.D.
denitrifying Nitrate reduction in presence of wild-type Pseudomonas N2-E3; replicate A N.D. N.D. +0.5 -0.8 N.D.
lb LB N.D. N.D. +0.6 -0.8 N.D.
stress 5-Hydroxymethylfurfural 2.5 mM N.D. N.D. +0.5 -0.6 N.D.
denitrifying Nitrate reduction, replicate C t1 N.D. N.D. +0.6 -0.6 N.D.
stress Paraquat dichloride 0.016 mg/mL N.D. N.D. +0.7 -0.5 N.D.
stress Carbenicillin 2 mg/ml N.D. N.D. +0.7 -0.5 N.D.
denitrifying Nitrate reduction, replicate C t3 N.D. N.D. +0.9 -0.5 N.D.
stress acetate 20 mM N.D. N.D. +0.8 -0.3 N.D.
nitrogen source L-Serine (N) N.D. N.D. +0.8 +0.3 N.D.
stress Doxycycline hyclate 0.0001 mg/ml N.D. N.D. +0.9 +0.3 N.D.
anaerobic Nitrate reduction N.D. N.D. +0.6 +0.6 N.D.
temperature LB 37C N.D. N.D. +0.7 +0.8 N.D.
stress Bacitracin 2 mg/ml N.D. N.D. +0.8 +0.8 N.D.
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