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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_5602 and Pf1N1B4_5603 are separated by 385 nucleotides
Pf1N1B4_5603 and Pf1N1B4_5604 are separated by 260 nucleotides
Pf1N1B4_5604 and Pf1N1B4_5605 are separated by 84 nucleotides
Pf1N1B4_5605 and Pf1N1B4_5606 are separated by 489 nucleotides
Pf1N1B4_5602 - 6-aminohexanoate-dimer hydrolase (EC 3.5.1.46), at 25,084 to 26,346
_5602
Pf1N1B4_5603 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 26,732 to 27,931
_5603
Pf1N1B4_5604 - Permeases of the major facilitator superfamily, at 28,192 to 29,352
_5604
Pf1N1B4_5605 - LysR family regulatory protein, at 29,437 to 30,378
_5605
Pf1N1B4_5606 - Alpha-ketoglutarate permease, at 30,868 to 32,253
_5606
Group
Condition
Pf1N1B4
_5602
Pf1N1B4
_5603
Pf1N1B4
_5604
Pf1N1B4
_5605
Pf1N1B4
_5606
temperature
LB 37C
+0.2
+0.1
-3.1
N.D.
-0.4
pH
Minimal media pH9
-0.3
+0.2
-1.7
N.D.
-0.3
carbon source
carbon source Sucrose 0.25mM
-0.4
-0.2
-1.7
N.D.
+0.5
nitrogen source
nitrogen source nitrite 0.1mM
-0.6
-0.2
-0.4
N.D.
-0.4
pH
Minimal media pH9
-0.5
-0.2
+0.4
N.D.
-0.4
stress
Cisplatin 0.006 mg/ml
-0.8
-0.3
+0.3
N.D.
+0.3
carbon source
octanoate (C)
+0.3
+0.4
-0.3
N.D.
-0.6
nitrogen source
Cytidine (N)
-0.6
-0.0
+0.7
N.D.
-0.2
carbon source
L-Histidine (C)
+0.4
+0.3
-0.5
N.D.
-0.3
lb
LB
-0.7
-0.1
+0.7
N.D.
+0.0
carbon source
L-Lactate (C)
-0.7
+0.2
+0.7
N.D.
-0.2
nitrogen source
Putrescine (N)
-0.6
+0.3
+0.5
N.D.
-0.1
carbon source
carbon source Sucrose 0.25mM
+1.1
-0.7
-0.1
N.D.
+0.1
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.7
+0.1
+0.1
N.D.
-0.6
carbon source
L-Glutamine (C)
-0.5
+0.3
+0.8
N.D.
-0.1
carbon source
Tween 20 (C)
+0.2
+0.2
+0.6
N.D.
-0.5
carbon source
carbon source Sucrose 5mM
+0.4
+0.2
-0.6
N.D.
+0.6
stress
D-Cycloserine 0.1 mg/ml
-0.1
+0.3
+0.8
N.D.
-0.4
nitrogen source
L-Leucine (N)
+0.3
+0.2
+0.6
N.D.
-0.5
nitrogen source
nitrate (N)
-0.4
-0.1
+0.9
N.D.
+0.3
stress
5-Hydroxymethylfurfural 2.5 mM
+0.4
+0.3
+0.4
N.D.
-0.3
stress
Chlorite 1 mM
-0.1
+0.0
+1.1
N.D.
-0.2
stress
Dimethyl Sulfoxide 6.5 vol%
-0.1
+0.3
+0.9
N.D.
-0.2
carbon source
Putrescine (C)
+0.5
+0.3
+0.5
N.D.
-0.2
carbon source
carbon source Sucrose 0.5mM
-0.0
-0.1
+0.5
N.D.
+0.9
nitrogen source
D-Glucosamine Hydrochloride (N)
+0.7
-0.1
+0.6
N.D.
+0.3
anaerobic
Nitrate reduction
+0.5
+0.5
+0.2
N.D.
+0.3
stress
Fusidic 0.0625 mg/ml
+0.7
+0.2
+1.0
N.D.
-0.3
stress
benzoic 0.58 mg/ml
+0.1
+0.1
+1.1
N.D.
+0.2
nitrogen source
Cytosine (N)
+0.1
+0.2
+1.0
N.D.
+0.5
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