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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Pf1N1B4_5541 and Pf1N1B4_5542 are separated by 497 nucleotides
Pf1N1B4_5542 and Pf1N1B4_5543 are separated by 370 nucleotides
Pf1N1B4_5543 and Pf1N1B4_5544 are separated by 10 nucleotides
Pf1N1B4_5544 and Pf1N1B4_5545 are separated by 777 nucleotides
Pf1N1B4_5541 - hypothetical protein, at 307,334 to 307,822
_5541
Pf1N1B4_5542 - hypothetical protein, at 308,320 to 308,523
_5542
Pf1N1B4_5543 - hypothetical protein, at 308,894 to 309,010
_5543
Pf1N1B4_5544 - Methyl-accepting chemotaxis protein, at 309,021 to 311,015
_5544
Pf1N1B4_5545 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 311,793 to 317,519
_5545
Group
Condition
Pf1N1B4
_5541
Pf1N1B4
_5542
Pf1N1B4
_5543
Pf1N1B4
_5544
Pf1N1B4
_5545
anaerobic
Nitrate reduction
-0.0
-1.3
N.D.
-0.1
+0.1
carbon source
carbon source Sucrose 5mM
-0.3
-0.8
N.D.
-0.1
-0.3
carbon source
D-Ribose (C)
-0.5
-0.6
N.D.
-0.1
-0.1
carbon source
acetate (C)
-0.4
-0.8
N.D.
-0.1
-0.0
nophagecontrol
Time16-nophage
-0.1
-1.0
N.D.
-0.2
-0.0
nitrogen source
nitrogen source nitrate 5mM
+0.1
-1.0
N.D.
-0.1
-0.2
carbon source
carbon source Sucrose 0.5mM
-0.6
-0.4
N.D.
-0.1
-0.1
denitrifying
Nitrate reduction, replicate A
-0.2
-0.7
N.D.
-0.0
-0.3
carbon source
a-Ketoglutaric (C)
+0.0
-1.0
N.D.
-0.2
+0.0
temperature
LB 37C
-0.5
-0.9
N.D.
+0.3
-0.1
carbon source
carbon source Sucrose 20mM
+0.0
-1.0
N.D.
-0.0
-0.1
carbon source
carbon source Sucrose 0.25mM
-0.2
-0.9
N.D.
-0.2
+0.2
anaerobic
Nitrate reduction
-0.1
-1.0
N.D.
+0.1
+0.0
stress
copper (II) chloride 2.5 mM
-0.1
-1.0
N.D.
+0.1
+0.1
stress
Chlorite 1 mM
+0.0
-0.9
N.D.
-0.2
+0.1
stress
Tetracycline 0.0004 mg/ml
-0.4
-0.5
N.D.
-0.0
+0.2
stress
Cholin acetate 10 mM
+0.4
-0.9
N.D.
-0.1
-0.1
denitrifying
Nitrate reduction, replicate B
-0.3
+0.4
N.D.
-0.3
-0.2
denitrifying
Nitrate reduction, replicate C
-0.4
+0.5
N.D.
-0.2
-0.3
carbon source
carbon source Sucrose 0.25mM
-0.5
+0.4
N.D.
+0.2
-0.2
temperature
LB 37C
-0.3
+0.7
N.D.
-0.1
-0.0
carbon source
Glycerol (C)
-0.5
+0.7
N.D.
+0.0
+0.0
carbon source
L-Lactate (C)
-0.4
+0.6
N.D.
+0.2
+0.0
nitrogen source
L-Methionine (N)
-0.4
+0.9
N.D.
-0.0
-0.0
carbon source
casaminos (C)
-0.2
+0.9
N.D.
-0.0
-0.1
nitrogen source
D-Alanine (N)
-0.3
+0.9
N.D.
+0.0
+0.0
carbon source
D-Gluconic Acid (C)
-0.3
+1.0
N.D.
-0.0
-0.0
carbon source
D-Gluconic Acid (C)
-0.2
+1.0
N.D.
+0.0
+0.1
stress
Chloride 300 mM
+0.3
+0.8
N.D.
-0.1
-0.0
anaerobic
N2E2wt with N1B4m denitrifying repA
-0.2
+1.1
N.D.
+0.2
-0.1
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