Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_5411 and Pf1N1B4_5412 are separated by 7 nucleotidesPf1N1B4_5412 and Pf1N1B4_5413 are separated by 1935 nucleotidesPf1N1B4_5413 and Pf1N1B4_5414 are separated by 363 nucleotidesPf1N1B4_5414 and Pf1N1B4_5415 are separated by 3 nucleotides Pf1N1B4_5411 - hypothetical protein, at 146,207 to 147,616 _5411 Pf1N1B4_5412 - hypothetical protein, at 147,624 to 148,703 _5412 Pf1N1B4_5413 - hypothetical protein, at 150,639 to 152,111 _5413 Pf1N1B4_5414 - IncF plasmid conjugative transfer pilus assembly protein TraC, at 152,475 to 155,366 _5414 Pf1N1B4_5415 - hypothetical protein, at 155,370 to 155,732 _5415
Group Condition Pf1N1B4_5411 Pf1N1B4_5412 Pf1N1B4_5413 Pf1N1B4_5414 Pf1N1B4_5415
carbon source octanoate (C) -0.9 N.D. -0.5 -0.0 -0.1
stress Choline chloride 200 mM -0.7 N.D. -0.1 +0.0 -0.6
temperature LB 37C -0.6 N.D. -0.7 -0.6 +0.6
stress Cobalt chloride 0.3125 mM -0.6 N.D. -0.0 -0.2 -0.4
stress nitrite 10 mM -0.6 N.D. -0.2 -0.5 +0.0
carbon source D-Lactate (C) -0.8 N.D. -0.1 -0.3 -0.0
temperature LB 37C -0.1 N.D. -0.4 -0.3 -0.4
anaerobic Nitrate reduction -0.3 N.D. -0.3 -0.0 -0.5
carbon source D-Gluconic Acid (C) -0.2 N.D. +0.1 -0.1 -0.8
stress Nalidixic 0.004 mg/ml +0.1 N.D. -0.4 -0.2 -0.5
stress Doxycycline hyclate 0.0001 mg/ml -0.5 N.D. -0.2 -0.3 +0.2
pH Minimal media pH9 -0.2 N.D. +0.2 +0.0 -0.9
stress 5-Hydroxymethylfurfural 2.5 mM -0.6 N.D. +0.3 -0.0 -0.4
carbon source L-Lactate (C) +0.3 N.D. -0.2 -0.2 -0.5
carbon source carbon source Sucrose 5mM -0.4 N.D. -0.2 -0.2 +0.5
stress Chlorite 1 mM +0.4 N.D. +0.1 -0.2 -0.6
carbon source carbon source Sucrose 1mM +0.3 N.D. +0.1 -0.7 +0.1
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 +0.6 N.D. +0.2 -0.0 -0.8
nitrogen source nitrate (N) +0.7 N.D. -0.6 +0.1 -0.2
carbon source carbon source Sucrose 0.5mM -0.5 N.D. +0.4 -0.2 +0.4
nitrogen source nitrogen source nitrate 20mM +0.2 N.D. -0.0 -0.5 +0.5
carbon source D-Glucose (C) +0.3 N.D. +0.2 -0.4 +0.2
carbon source D-Fructose (C) +0.4 N.D. +0.5 -0.3 -0.0
carbon source carbon source Sucrose 5mM -0.3 N.D. +0.4 -0.2 +0.8
nitrogen source Adenine (N) +0.8 N.D. +0.0 +0.1 -0.1
carbon source carbon source Sucrose 1mM -0.9 N.D. +0.4 +0.3 +1.1
stress Carbenicillin 2 mg/ml +0.5 N.D. +0.2 -0.1 +0.3
carbon source carbon source Sucrose 0.25mM +0.8 N.D. -0.6 -0.2 +0.9
carbon source pyruvate (C) +0.6 N.D. -0.1 +0.0 +0.6
anaerobic N2E2wt with N1B4m denitrifying repB +0.3 N.D. +0.4 +0.2 +0.7
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