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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_525 and Pf1N1B4_526 are separated by 9 nucleotides
Pf1N1B4_526 and Pf1N1B4_527 are separated by 51 nucleotides
Pf1N1B4_527 and Pf1N1B4_528 are separated by 175 nucleotides
Pf1N1B4_528 and Pf1N1B4_529 are separated by 82 nucleotides
Pf1N1B4_525 - Agmatinase (EC 3.5.3.11), at 624,569 to 625,519
_525
Pf1N1B4_526 - Undecaprenyl pyrophosphate synthase, at 625,529 to 625,951
_526
Pf1N1B4_527 - Cytosine/purine/uracil/thiamine/allantoin permease family protein, at 626,003 to 627,514
_527
Pf1N1B4_528 - sodium-solute symporter, putative, at 627,690 to 629,069
_528
Pf1N1B4_529 - SoxH protein, homolog, at 629,152 to 629,877
_529
Group
Condition
Pf1N1B4
_525
Pf1N1B4
_526
Pf1N1B4
_527
Pf1N1B4
_528
Pf1N1B4
_529
temperature
LB 37C
-1.5
+0.0
-0.4
-0.2
-0.2
temperature
LB 37C
-0.4
-0.5
-0.2
-0.5
-0.2
stress
methylglyoxal 0.004 vol%
-0.2
-0.7
-0.2
-0.0
-0.7
lb
LB
-0.8
-0.5
+0.3
-0.1
-0.4
stress
Dimethyl Sulfoxide 6.5 vol%
-0.9
-0.6
+0.2
+0.0
-0.0
anaerobic
Nitrate reduction
-1.0
-0.3
-0.1
-0.1
+0.3
stress
Thallium(I) acetate 0.008 mg/ml
-0.9
+0.3
+0.1
-0.2
-0.4
lb
LB
+0.3
-0.8
+0.1
-0.1
-0.4
carbon source
carbon source Sucrose 0.25mM
-0.0
-1.1
+0.0
-0.2
+0.4
carbon source
carbon source Sucrose 0.25mM
-0.4
-0.5
-0.2
-0.2
+0.4
nitrogen source
L-Lysine (N)
-0.9
-0.3
+0.2
+0.1
+0.2
carbon source
carbon source Sucrose 1mM
+0.7
-0.3
+0.0
-0.5
-0.4
stress
Cisplatin 0.006 mg/ml
-1.0
+0.4
+0.3
-0.0
-0.1
lb
LB
-0.2
-1.0
+0.2
+0.4
+0.2
stress
benzoic 0.58 mg/ml
-1.1
+0.3
+0.1
+0.3
+0.3
stress
nitrate 100 mM
-0.6
+0.1
+0.3
+0.3
-0.2
carbon source
L-Isoleucine (C)
-0.5
+0.7
+0.3
-0.3
-0.1
anaerobic
N2E2wt with N1B4m denitrifying repA
-0.1
+0.5
-0.2
+0.4
-0.5
denitrifying
Nitrate reduction, replicate C
-1.0
+0.1
+0.4
+0.5
+0.0
lb
LB
+0.7
-0.6
+0.1
+0.2
-0.2
stress
Cisplatin 0.006 mg/ml
-0.6
+1.0
+0.1
-0.1
+0.3
nitrogen source
nitrogen source nitrite 1mM
-0.7
+0.3
+0.8
-0.1
+0.4
nitrogen source
nitrogen source nitrite 0.1mM
-0.7
+1.0
+1.2
+0.1
-0.8
nitrogen source
nitrogen source nitrite 1mM
-0.3
+0.9
+0.9
-0.2
-0.1
nitrogen source
Cytidine (N)
-0.1
+1.0
+0.4
-0.3
+0.3
carbon source
D-Trehalose (C)
-0.5
+0.7
+1.0
+0.1
+0.2
nitrogen source
Thymine (N)
-0.2
+0.7
+0.4
+0.4
+0.5
nitrogen source
nitrogen source nitrite 0.5mM
-0.0
+1.5
+1.5
-0.1
-0.5
nitrogen source
nitrogen source nitrite 0.5mM
+0.3
+1.0
+1.6
-0.2
-0.4
nitrogen source
nitrogen source nitrite 0.1mM
+0.3
+1.5
+1.5
-0.1
-0.1
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