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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_5149 and Pf1N1B4_5150 are separated by 2 nucleotides
Pf1N1B4_5150 and Pf1N1B4_5151 are separated by 2262 nucleotides
Pf1N1B4_5151 and Pf1N1B4_5152 are separated by 173 nucleotides
Pf1N1B4_5152 and Pf1N1B4_5153 are separated by 525 nucleotides
Pf1N1B4_5149 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 5,732,960 to 5,733,703
_5149
Pf1N1B4_5150 - FIG00933687: hypothetical protein, at 5,733,706 to 5,736,129
_5150
Pf1N1B4_5151 - FIG002283: Isochorismatase family protein, at 5,738,392 to 5,739,045
_5151
Pf1N1B4_5152 - hypothetical protein, at 5,739,219 to 5,740,121
_5152
Pf1N1B4_5153 - Putative membrane-bound ClpP-class protease associated with aq_911, at 5,740,647 to 5,742,023
_5153
Group
Condition
Pf1N1B4
_5149
Pf1N1B4
_5150
Pf1N1B4
_5151
Pf1N1B4
_5152
Pf1N1B4
_5153
nitrogen source
Ammonium chloride (N)
-0.3
+0.1
-0.9
-0.4
-0.4
nitrogen source
Cytidine (N)
-0.2
+0.1
-1.3
-0.1
-0.3
nitrogen source
Uridine (N)
-0.3
+0.1
-1.2
-0.3
-0.1
nitrogen source
nitrogen source nitrate 5mM
+0.0
+0.1
-0.2
-1.2
-0.5
carbon source
acetate (C)
+0.2
-0.4
-0.9
-0.3
-0.2
carbon source
D-Fructose (C)
-0.6
+0.2
-0.5
-0.1
-0.6
denitrifying
Nitrate reduction, replicate A
+0.2
+0.2
-0.7
-0.8
-0.4
nitrogen source
nitrogen source Ammonium chloride 20mM
-0.5
-0.5
+0.3
-0.2
-0.4
carbon source
pyruvate (C)
+0.3
-0.2
-0.7
-0.4
-0.4
carbon source
carbon source Sucrose 1mM
-0.7
-0.9
+0.2
+0.0
+0.3
carbon source
carbon source Sucrose 5mM
-1.0
-0.2
+0.2
+0.3
-0.2
stress
Paraquat dichloride 0.016 mg/mL
+0.2
+0.1
+0.3
-1.0
-0.4
temperature
LB 37C
-0.9
+0.2
-0.7
+0.4
+0.5
nitrogen source
nitrogen source nitrate 20mM
+0.2
-0.3
+0.8
-0.8
-0.2
carbon source
carbon source Sucrose 0.25mM
-0.0
-0.1
+1.2
-1.6
+0.3
temperature
LB 37C
+0.2
+0.5
-0.0
+0.6
-1.4
nitrogen source
L-Leucine (N)
+0.5
-0.4
+0.2
+0.6
-0.4
stress
Choline Lysine 6 mM
-0.7
-0.3
+0.5
+0.5
+0.5
nitrogen source
D-Alanine (N)
+0.3
-0.2
+1.1
-0.2
-0.3
stress
Sisomicin 0.001 mg/ml
-0.2
-0.3
+0.6
+0.7
+0.1
anaerobic
Nitrate reduction
+0.1
-0.5
+0.6
+0.3
+0.4
carbon source
m-Inositol (C)
+0.7
-0.3
+0.8
+0.2
-0.3
carbon source
D-Mannose (C)
+0.7
-0.3
+0.6
+0.4
-0.2
carbon source
carbon source Sucrose 0.25mM
+0.2
-0.5
+1.3
-0.1
+0.4
denitrifying
Nitrate reduction, replicate C t1
-0.1
+0.7
-0.2
+0.9
+0.1
stress
5-Hydroxymethylfurfural 2.5 mM
-0.0
-0.4
+0.9
+0.9
+0.1
stress
D-Cycloserine 0.1 mg/ml
+0.7
-0.5
+0.4
+0.6
+0.3
phagefrs
Time6-FRS
+0.6
-0.2
+0.3
+0.6
+0.2
carbon source
L-Arginine (C)
+0.7
-0.2
+1.5
+0.3
-0.4
carbon source
octanoate (C)
+0.5
-0.3
+0.4
+1.4
-0.1
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