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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_4828 and Pf1N1B4_4829 are separated by 3 nucleotides
Pf1N1B4_4829 and Pf1N1B4_4830 are separated by 46 nucleotides
Pf1N1B4_4830 and Pf1N1B4_4831 are separated by 5 nucleotides
Pf1N1B4_4831 and Pf1N1B4_4832 are separated by 562 nucleotides
Pf1N1B4_4828 - hypothetical protein, at 5,332,933 to 5,333,238
_4828
Pf1N1B4_4829 - Membrane protein, putative, at 5,333,242 to 5,334,234
_4829
Pf1N1B4_4830 - Membrane fusion component of tripartite multidrug resistance system, at 5,334,281 to 5,335,420
_4830
Pf1N1B4_4831 - Outer membrane protein assembly factor YaeT precursor, at 5,335,426 to 5,336,895
_4831
Pf1N1B4_4832 - hypothetical protein, at 5,337,458 to 5,337,664
_4832
Group
Condition
Pf1N1B4
_4828
Pf1N1B4
_4829
Pf1N1B4
_4830
Pf1N1B4
_4831
Pf1N1B4
_4832
phagefrs
Time6-FRS
-0.6
-0.4
-1.1
-0.5
-0.4
temperature
LB 37C
-0.7
-1.7
+0.8
-0.3
-0.9
carbon source
carbon source Sucrose 5mM
-1.2
-0.3
-0.8
-0.0
-0.3
nophagecontrol
TIme6-nophage
-0.6
-0.8
+0.4
-1.3
-0.2
carbon source
carbon source Sucrose 0.25mM
+0.4
-0.1
-2.8
+0.4
-0.4
carbon source
octanoate (C)
-1.4
-0.7
+0.3
+0.5
-0.7
temperature
LB 37C
+0.2
-0.1
-0.1
-1.6
-0.4
stress
Doxycycline hyclate 0.0001 mg/ml
-1.2
-0.2
-0.5
-0.3
+0.3
carbon source
carbon source Sucrose 1mM
-1.1
+0.4
+0.1
+0.3
-1.1
carbon source
D-Galactose (C)
+0.1
-0.5
-1.6
+0.6
+0.0
carbon source
carbon source Sucrose 5mM
-0.4
-0.1
-1.2
+0.6
-0.1
stress
nitrite 10 mM
+0.7
+0.2
-0.1
-1.3
-0.4
nitrogen source
L-Methionine (N)
-1.2
-0.0
+0.1
+0.8
-0.3
nitrogen source
nitrogen source nitrite 0.1mM
+0.8
+0.2
-0.7
-0.9
-0.1
stress
Paraquat dichloride 0.016 mg/mL
+0.3
-0.4
-0.4
+1.0
-0.5
stress
Cephalothin 2.5 mg/ml
-0.7
-0.5
+0.5
+1.0
-0.1
nitrogen source
Ammonium chloride (N)
-0.6
+0.0
+0.4
+1.0
-0.4
carbon source
L-Glutamine (C)
-0.5
-0.3
+0.8
+0.8
-0.3
denitrifying
Nitrate reduction, replicate B
+0.2
-0.3
+1.5
-0.7
-0.1
stress
Cisplatin 0.006 mg/ml
-0.2
+0.3
+1.4
-0.7
-0.2
lb
LB
-0.2
+0.4
+1.3
-0.3
-0.4
lb
LB
-0.1
+0.4
+1.5
-0.4
-0.3
stress
Cisplatin 0.006 mg/ml
-0.3
+0.4
+1.5
-0.0
-0.2
nitrogen source
Cytosine (N)
-0.1
+0.3
+0.8
+1.0
-0.3
denitrifying
Nitrate reduction, replicate C t3
+0.7
+0.5
+0.8
+0.3
-0.4
denitrifying
Nitrate reduction, replicate B t2
+0.7
+0.7
+0.7
+0.1
-0.3
anaerobic
Nitrate reduction
+0.9
+0.8
+0.8
-0.1
-0.5
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
+0.7
+1.6
-0.0
-0.1
denitrifying
Nitrate reduction, replicate A t1
+0.4
+1.2
+0.4
+1.2
-0.6
denitrifying
Nitrate reduction, replicate A t2
+0.9
+0.9
+1.3
+1.4
-0.6
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