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Protein
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Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_4819 and Pf1N1B4_4820 are separated by 65 nucleotides
Pf1N1B4_4820 and Pf1N1B4_4821 are separated by 17 nucleotides
Pf1N1B4_4821 and Pf1N1B4_4822 overlap by 20 nucleotides
Pf1N1B4_4822 and Pf1N1B4_4823 overlap by 4 nucleotides
Pf1N1B4_4819 - Multidrug resistance protein B, at 5,322,863 to 5,324,107
_4819
Pf1N1B4_4820 - ortholog of Bordetella pertussis (BX470248) BP2750, at 5,324,173 to 5,324,727
_4820
Pf1N1B4_4821 - Paraquat-inducible protein B, at 5,324,745 to 5,326,400
_4821
Pf1N1B4_4822 - Paraquat-inducible protein A, at 5,326,381 to 5,327,061
_4822
Pf1N1B4_4823 - Paraquat-inducible protein A, at 5,327,058 to 5,327,654
_4823
Group
Condition
Pf1N1B4
_4819
Pf1N1B4
_4820
Pf1N1B4
_4821
Pf1N1B4
_4822
Pf1N1B4
_4823
temperature
LB 37C
+0.2
N.D.
N.D.
-1.6
-0.7
nitrogen source
nitrogen source nitrite 0.1mM
+0.1
N.D.
N.D.
-1.7
-0.2
nitrogen source
Cytidine (N)
+0.2
N.D.
N.D.
-1.5
-0.2
nophagecontrol
Time16-nophage
-0.1
N.D.
N.D.
-1.3
-0.1
denitrifying
Nitrate reduction, replicate C t1
-0.0
N.D.
N.D.
-1.3
+0.0
nitrogen source
Adenine (N)
+0.3
N.D.
N.D.
-0.6
-0.9
stress
Doxycycline hyclate 0.0001 mg/ml
+0.0
N.D.
N.D.
-0.5
-0.7
nitrogen source
nitrogen source nitrate 20mM
-0.6
N.D.
N.D.
-0.7
+0.2
nitrogen source
Uridine (N)
+0.2
N.D.
N.D.
-1.6
+0.1
denitrifying
Nitrate reduction, replicate B
-0.3
N.D.
N.D.
-0.7
+0.3
anaerobic
Nitrate reduction
+0.4
N.D.
N.D.
+0.3
-0.6
nitrogen source
nitrogen source Ammonium chloride 20mM
+0.3
N.D.
N.D.
-0.6
+0.4
carbon source
Uridine (C)
+0.4
N.D.
N.D.
-0.6
+0.4
anaerobic
N2E2wt with N1B4m denitrifying repB
+0.2
N.D.
N.D.
+0.7
-0.8
nitrogen source
D-Alanine (N)
+0.3
N.D.
N.D.
-0.6
+0.6
stress
methylglyoxal 0.008 vol%
+0.2
N.D.
N.D.
+0.9
-0.8
carbon source
D-Galacturonic Acid (C)
+0.4
N.D.
N.D.
-0.6
+0.6
stress
Gentamicin 0.001 mg/ml
-0.1
N.D.
N.D.
+0.9
-0.3
stress
sodium fluoride 12.5 mM
+0.6
N.D.
N.D.
+0.6
-0.7
carbon source
octanoate (C)
+0.2
N.D.
N.D.
-0.6
+1.0
nitrogen source
L-Valine (N)
+0.5
N.D.
N.D.
-0.2
+0.7
carbon source
L-Leucine (C)
+0.6
N.D.
N.D.
-0.2
+0.8
nitrogen source
L-Methionine (N)
+0.6
N.D.
N.D.
-0.4
+1.0
stress
Fusidic 0.0625 mg/ml
+0.4
N.D.
N.D.
+0.7
+0.1
anaerobic
N2E2wt with N1B4m denitrifying repA
+0.1
N.D.
N.D.
+0.6
+0.6
carbon source
L-Citrulline (C)
+0.2
N.D.
N.D.
+0.6
+0.7
lb
LB
+0.3
N.D.
N.D.
+0.5
+0.6
nitrogen source
Putrescine (N)
+0.4
N.D.
N.D.
+0.3
+0.7
carbon source
D-Mannose (C)
+0.3
N.D.
N.D.
+0.5
+0.8
carbon source
L-Isoleucine (C)
+0.3
N.D.
N.D.
+1.1
+0.3
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