Fitness for 5 genes in Pseudomonas fluorescens FW300-N1B4

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500 ntPf1N1B4_480 and Pf1N1B4_481 are separated by 100 nucleotidesPf1N1B4_481 and Pf1N1B4_482 are separated by 196 nucleotidesPf1N1B4_482 and Pf1N1B4_483 are separated by 135 nucleotidesPf1N1B4_483 and Pf1N1B4_484 are separated by 92 nucleotides Pf1N1B4_480 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 570,930 to 573,119 _480 Pf1N1B4_481 - FIG00956241: hypothetical protein, at 573,220 to 573,627 _481 Pf1N1B4_482 - Transcriptional regulator, LysR family, at 573,824 to 574,822 _482 Pf1N1B4_483 - Metal-dependent hydrolase related to alanyl-tRNA synthetase, at 574,958 to 575,539 _483 Pf1N1B4_484 - Hydrogenase maturation factor, at 575,632 to 576,402 _484
Group Condition Pf1N1B4_480 Pf1N1B4_481 Pf1N1B4_482 Pf1N1B4_483 Pf1N1B4_484
stress Choline chloride 200 mM -0.3 -0.5 -0.1 -0.9 +0.0
temperature LB 37C -0.2 -1.7 -0.1 +0.3 +0.0
stress Gentamicin 0.001 mg/ml -0.3 -0.5 +0.1 -0.8 +0.1
stress Tetracycline 0.0004 mg/ml -0.1 -0.1 -0.4 -1.0 +0.2
stress Doxycycline hyclate 0.0001 mg/ml +0.0 -0.3 +0.1 -1.2 +0.2
stress benzoic 0.58 mg/ml +0.2 -0.2 +0.2 -1.4 +0.1
stress Chlorite 1 mM -0.2 -0.2 +0.3 -1.2 +0.2
stress Aluminum chloride 2.5 mM -0.1 -0.7 +0.2 +0.2 -0.6
carbon source carbon source Sucrose 0.25mM -0.1 +0.9 -0.5 -1.3 +0.2
stress nitrite 10 mM +0.1 +0.2 +0.3 -1.5 +0.1
denitrifying Nitrate reduction, replicate B +0.1 +0.1 +0.5 -1.0 +0.1
carbon source carbon source Sucrose 0.25mM -0.1 -0.5 -0.1 +0.7 +0.5
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate B; timepoint 1 +0.4 +0.2 +0.3 -0.6 +0.2
nitrogen source nitrogen source nitrate 5mM +0.1 +0.2 -0.7 +1.1 -0.0
carbon source D-Ribose (C) +0.2 -0.5 +0.3 +0.7 +0.3
stress Fusidic 0.125 mg/ml -0.3 -0.2 +0.6 +1.1 -0.1
stress copper (II) chloride 2.5 mM -0.3 +0.0 +0.3 +1.1 +0.0
nitrogen source nitrogen source nitrite 0.5mM +0.1 +0.6 -0.2 +0.8 -0.2
carbon source acetate (C) -0.1 -0.2 +0.2 +1.0 +0.3
nitrogen source Thymine (N) -0.0 +0.4 -0.2 +1.0 +0.0
nitrogen source nitrogen source nitrite 0.1mM +0.1 +0.2 -0.5 +1.4 +0.0
carbon source D-Ribose (C) +0.1 -0.3 +0.1 +1.3 +0.2
nitrogen source nitrogen source nitrate 5mM -0.1 +0.4 +0.6 +0.7 +0.1
nitrogen source nitrate (N) +0.2 +0.4 +0.2 +0.8 +0.1
nitrogen source Adenine (N) +0.1 +0.2 +0.4 +1.1 -0.0
carbon source L-Lactate (C) +0.1 +0.3 +0.0 +1.3 +0.2
nitrogen source nitrogen source nitrate 20mM +0.3 +0.2 +0.2 +0.9 +0.3
carbon source carbon source Sucrose 1mM +0.3 +0.5 -0.6 +1.3 +0.4
denitrifying Denitrifying in presence of WT Pseudomonas N2-E3; replicate C; timepoint 1 +0.6 +0.5 +0.2 +0.6 +0.2
nitrogen source Uridine (N) +0.3 +0.4 +0.0 +1.4 +0.3
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