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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas fluorescens FW300-N1B4
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500 nt
Pf1N1B4_4748 and Pf1N1B4_4749 are separated by 246 nucleotides
Pf1N1B4_4749 and Pf1N1B4_4750 are separated by 1615 nucleotides
Pf1N1B4_4750 and Pf1N1B4_4751 are separated by 161 nucleotides
Pf1N1B4_4751 and Pf1N1B4_4752 are separated by 222 nucleotides
Pf1N1B4_4748 - transporter, putative, at 5,243,344 to 5,244,531
_4748
Pf1N1B4_4749 - ABC transporter ATP-binding protein uup, at 5,244,778 to 5,246,343
_4749
Pf1N1B4_4750 - Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO, at 5,247,959 to 5,248,795
_4750
Pf1N1B4_4751 - Ku domain protein, at 5,248,957 to 5,249,817
_4751
Pf1N1B4_4752 - FIG00962948: hypothetical protein, at 5,250,040 to 5,250,384
_4752
Group
Condition
Pf1N1B4
_4748
Pf1N1B4
_4749
Pf1N1B4
_4750
Pf1N1B4
_4751
Pf1N1B4
_4752
carbon source
octanoate (C)
-0.3
-0.6
-1.8
+0.2
N.D.
stress
Doxycycline hyclate 0.0001 mg/ml
-1.3
+0.2
-1.1
-0.1
N.D.
stress
Nalidixic 0.004 mg/ml
-0.9
-0.7
-0.4
-0.1
N.D.
carbon source
D-Lactate (C)
-0.9
-0.2
-0.2
-0.2
N.D.
stress
Fusidic 0.125 mg/ml
+0.2
+0.0
-1.2
-0.3
N.D.
anaerobic
Nitrate reduction
-0.5
-0.5
+0.4
-0.3
N.D.
stress
Carbenicillin 2 mg/ml
-0.1
-0.9
+0.6
-0.2
N.D.
nitrogen source
nitrogen source nitrate 20mM
-0.7
-0.3
+0.3
+0.2
N.D.
carbon source
carbon source Sucrose 0.25mM
-1.0
+0.5
+0.7
-0.5
N.D.
stress
Fusidic 0.0625 mg/ml
+0.3
+0.3
-0.6
-0.3
N.D.
denitrifying
Nitrate reduction, replicate A t1
+0.3
-0.5
+0.3
-0.4
N.D.
stress
1-ethyl-3-methylimidazolium chloride 80 mM
-0.9
-0.0
+0.4
+0.3
N.D.
temperature
LB 37C
-0.5
+0.2
+0.7
-0.5
N.D.
nitrogen source
nitrogen source nitrite 0.1mM
+0.0
+0.4
+0.4
-0.8
N.D.
carbon source
L-Leucine (C)
-0.5
+0.8
+0.1
-0.2
N.D.
pH
Minimal media pH9
+0.5
-0.2
+0.6
-0.4
N.D.
carbon source
carbon source Sucrose 0.25mM
+0.1
+0.0
+1.0
-0.3
N.D.
pH
Minimal media pH9
+0.2
-0.1
+1.0
-0.2
N.D.
nitrogen source
Adenine (N)
-0.3
+0.2
+0.2
+1.0
N.D.
nitrogen source
Uridine (N)
-0.4
-0.1
+0.5
+1.2
N.D.
stress
nitrate 100 mM
+0.4
+0.2
+1.0
-0.2
N.D.
stress
Cisplatin 0.006 mg/ml
-0.1
+0.4
+0.4
+0.8
N.D.
lb
LB
+0.4
+0.2
+0.0
+0.8
N.D.
nitrogen source
nitrate (N)
+0.2
-0.3
+0.1
+1.5
N.D.
stress
Thallium(I) acetate 0.008 mg/ml
+0.2
+0.4
+0.1
+0.9
N.D.
carbon source
carbon source Sucrose 1mM
-0.0
-0.1
+1.1
+0.8
N.D.
nitrogen source
Cytosine (N)
+0.2
-0.1
+0.2
+1.5
N.D.
stress
Choline chloride 200 mM
+0.3
+0.3
+1.0
+0.4
N.D.
stress
Cisplatin 0.006 mg/ml
+0.5
+0.7
+0.4
+0.5
N.D.
carbon source
carbon source Sucrose 1mM
+0.5
+0.2
+0.7
+0.9
N.D.
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